Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21537

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21536 and SM_b21537 are separated by 146 nucleotidesSM_b21537 and SM_b21538 are separated by 27 nucleotides SM_b21536: SM_b21536 - hypothetical protein, at 1,064,008 to 1,065,678 _b21536 SM_b21537: SM_b21537 - 2-aminoethylphosphonate--pyruvate transaminase, at 1,065,825 to 1,066,976 _b21537 SM_b21538: SM_b21538 - phosphonoacetate hydrolase, at 1,067,004 to 1,068,278 _b21538 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1064.920 kb on - strand, within SM_b21536at 1064.920 kb on - strand, within SM_b21536at 1064.942 kb on + strand, within SM_b21536at 1065.151 kb on + strand, within SM_b21536at 1065.151 kb on + strand, within SM_b21536at 1065.152 kb on - strand, within SM_b21536at 1065.185 kb on - strand, within SM_b21536at 1065.837 kb on + strandat 1065.837 kb on + strandat 1065.987 kb on + strand, within SM_b21537at 1065.987 kb on + strand, within SM_b21537at 1065.987 kb on + strand, within SM_b21537at 1065.988 kb on - strand, within SM_b21537at 1066.092 kb on + strand, within SM_b21537at 1066.092 kb on + strand, within SM_b21537at 1066.092 kb on + strand, within SM_b21537at 1066.123 kb on - strand, within SM_b21537at 1066.161 kb on + strand, within SM_b21537at 1066.161 kb on + strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.162 kb on - strand, within SM_b21537at 1066.163 kb on + strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.164 kb on - strand, within SM_b21537at 1066.293 kb on + strand, within SM_b21537at 1066.294 kb on - strand, within SM_b21537at 1066.294 kb on - strand, within SM_b21537at 1066.512 kb on + strand, within SM_b21537at 1066.512 kb on + strand, within SM_b21537at 1066.512 kb on + strand, within SM_b21537at 1066.513 kb on - strand, within SM_b21537at 1066.542 kb on - strand, within SM_b21537at 1066.542 kb on - strand, within SM_b21537at 1066.542 kb on - strand, within SM_b21537at 1066.767 kb on + strand, within SM_b21537at 1066.768 kb on - strand, within SM_b21537at 1066.768 kb on - strand, within SM_b21537at 1066.768 kb on - strand, within SM_b21537at 1066.800 kb on + strand, within SM_b21537at 1066.800 kb on + strand, within SM_b21537at 1067.107 kb on - strandat 1067.272 kb on - strand, within SM_b21538at 1067.272 kb on - strand, within SM_b21538at 1067.355 kb on + strand, within SM_b21538at 1067.356 kb on - strand, within SM_b21538at 1067.545 kb on - strand, within SM_b21538at 1067.619 kb on + strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.620 kb on - strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.637 kb on + strand, within SM_b21538at 1067.652 kb on + strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.653 kb on - strand, within SM_b21538at 1067.802 kb on + strand, within SM_b21538at 1067.802 kb on + strand, within SM_b21538at 1067.803 kb on - strand, within SM_b21538at 1067.803 kb on - strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.874 kb on + strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.875 kb on - strand, within SM_b21538at 1067.916 kb on + strand, within SM_b21538

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,064,920 - SM_b21536 0.55 +1.7
1,064,920 - SM_b21536 0.55 -1.3
1,064,942 + SM_b21536 0.56 -0.2
1,065,151 + SM_b21536 0.68 -2.9
1,065,151 + SM_b21536 0.68 +0.0
1,065,152 - SM_b21536 0.68 -2.7
1,065,185 - SM_b21536 0.70 +0.4
1,065,837 + +0.6
1,065,837 + -1.2
1,065,987 + SM_b21537 0.14 -2.7
1,065,987 + SM_b21537 0.14 +1.0
1,065,987 + SM_b21537 0.14 +0.6
1,065,988 - SM_b21537 0.14 +0.2
1,066,092 + SM_b21537 0.23 -1.5
1,066,092 + SM_b21537 0.23 +0.1
1,066,092 + SM_b21537 0.23 -1.4
1,066,123 - SM_b21537 0.26 +0.5
1,066,161 + SM_b21537 0.29 -0.5
1,066,161 + SM_b21537 0.29 +0.8
1,066,162 - SM_b21537 0.29 +0.2
1,066,162 - SM_b21537 0.29 -0.9
1,066,162 - SM_b21537 0.29 +2.9
1,066,162 - SM_b21537 0.29 +2.0
1,066,162 - SM_b21537 0.29 -0.8
1,066,162 - SM_b21537 0.29 -0.8
1,066,163 + SM_b21537 0.29 -3.2
1,066,164 - SM_b21537 0.29 +0.1
1,066,164 - SM_b21537 0.29 +0.1
1,066,164 - SM_b21537 0.29 +0.9
1,066,164 - SM_b21537 0.29 +0.9
1,066,164 - SM_b21537 0.29 +0.5
1,066,164 - SM_b21537 0.29 +0.5
1,066,293 + SM_b21537 0.41 -1.0
1,066,294 - SM_b21537 0.41 +0.3
1,066,294 - SM_b21537 0.41 +0.5
1,066,512 + SM_b21537 0.60 -0.0
1,066,512 + SM_b21537 0.60 -1.8
1,066,512 + SM_b21537 0.60 -0.2
1,066,513 - SM_b21537 0.60 +1.5
1,066,542 - SM_b21537 0.62 +0.1
1,066,542 - SM_b21537 0.62 +0.4
1,066,542 - SM_b21537 0.62 -1.0
1,066,767 + SM_b21537 0.82 +0.9
1,066,768 - SM_b21537 0.82 +2.5
1,066,768 - SM_b21537 0.82 +0.2
1,066,768 - SM_b21537 0.82 -3.3
1,066,800 + SM_b21537 0.85 -0.9
1,066,800 + SM_b21537 0.85 -0.3
1,067,107 - -0.9
1,067,272 - SM_b21538 0.21 -2.7
1,067,272 - SM_b21538 0.21 +0.6
1,067,355 + SM_b21538 0.28 +0.2
1,067,356 - SM_b21538 0.28 -0.2
1,067,545 - SM_b21538 0.42 +1.5
1,067,619 + SM_b21538 0.48 +0.8
1,067,620 - SM_b21538 0.48 -0.5
1,067,620 - SM_b21538 0.48 +0.7
1,067,620 - SM_b21538 0.48 -0.2
1,067,637 + SM_b21538 0.50 -0.3
1,067,637 + SM_b21538 0.50 -0.7
1,067,637 + SM_b21538 0.50 +2.2
1,067,652 + SM_b21538 0.51 +1.5
1,067,653 - SM_b21538 0.51 +0.9
1,067,653 - SM_b21538 0.51 -0.9
1,067,653 - SM_b21538 0.51 +0.7
1,067,653 - SM_b21538 0.51 +0.8
1,067,802 + SM_b21538 0.63 +3.7
1,067,802 + SM_b21538 0.63 -0.4
1,067,803 - SM_b21538 0.63 +0.8
1,067,803 - SM_b21538 0.63 +0.5
1,067,874 + SM_b21538 0.68 +0.1
1,067,874 + SM_b21538 0.68 -0.6
1,067,874 + SM_b21538 0.68 +0.2
1,067,875 - SM_b21538 0.68 -0.6
1,067,875 - SM_b21538 0.68 -5.4
1,067,875 - SM_b21538 0.68 -0.2
1,067,875 - SM_b21538 0.68 +2.1
1,067,875 - SM_b21538 0.68 -0.1
1,067,916 + SM_b21538 0.72 +2.0

Or see this region's nucleotide sequence