Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21446

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21445 and SM_b21446 overlap by 8 nucleotidesSM_b21446 and SM_b21447 are separated by 142 nucleotides SM_b21445: SM_b21445 - DNA topoisomerase I protein, at 1,373,479 to 1,374,621 _b21445 SM_b21446: SM_b21446 - glycosyl hydrolase, at 1,374,614 to 1,376,710 _b21446 SM_b21447: SM_b21447 - 1,4-alpha-glucan-branching protein, at 1,376,853 to 1,378,658 _b21447 Position (kb) 1374 1375 1376 1377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1373.672 kb on + strand, within SM_b21445at 1373.672 kb on + strand, within SM_b21445at 1373.673 kb on - strand, within SM_b21445at 1373.673 kb on - strand, within SM_b21445at 1373.856 kb on - strand, within SM_b21445at 1374.025 kb on + strand, within SM_b21445at 1374.025 kb on + strand, within SM_b21445at 1374.026 kb on - strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.098 kb on + strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.212 kb on - strand, within SM_b21445at 1374.375 kb on - strand, within SM_b21445at 1374.401 kb on - strand, within SM_b21445at 1374.509 kb on + strandat 1374.510 kb on - strandat 1374.615 kb on + strandat 1374.667 kb on + strandat 1374.767 kb on + strandat 1374.768 kb on - strandat 1374.847 kb on + strand, within SM_b21446at 1374.847 kb on + strand, within SM_b21446at 1374.847 kb on + strand, within SM_b21446at 1374.848 kb on - strand, within SM_b21446at 1374.849 kb on + strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.919 kb on - strand, within SM_b21446at 1374.919 kb on - strand, within SM_b21446at 1374.926 kb on + strand, within SM_b21446at 1374.926 kb on + strand, within SM_b21446at 1374.927 kb on - strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.641 kb on + strand, within SM_b21446at 1375.641 kb on + strand, within SM_b21446at 1375.641 kb on + strand, within SM_b21446at 1375.641 kb on + strand, within SM_b21446at 1375.642 kb on - strand, within SM_b21446at 1375.891 kb on - strand, within SM_b21446at 1375.972 kb on + strand, within SM_b21446at 1375.972 kb on + strand, within SM_b21446at 1375.973 kb on - strand, within SM_b21446at 1375.977 kb on + strand, within SM_b21446at 1375.977 kb on + strand, within SM_b21446at 1375.978 kb on - strand, within SM_b21446at 1376.014 kb on - strand, within SM_b21446at 1376.067 kb on + strand, within SM_b21446at 1376.214 kb on + strand, within SM_b21446at 1376.215 kb on - strand, within SM_b21446at 1376.215 kb on - strand, within SM_b21446at 1376.356 kb on + strand, within SM_b21446at 1376.356 kb on + strand, within SM_b21446at 1376.357 kb on - strand, within SM_b21446at 1376.357 kb on - strand, within SM_b21446at 1376.463 kb on + strand, within SM_b21446at 1376.487 kb on + strand, within SM_b21446at 1376.488 kb on - strand, within SM_b21446at 1376.518 kb on - strandat 1376.530 kb on + strandat 1376.725 kb on + strandat 1376.725 kb on + strandat 1376.726 kb on - strandat 1376.848 kb on + strandat 1376.848 kb on + strandat 1376.848 kb on + strandat 1376.849 kb on - strandat 1376.853 kb on - strandat 1377.125 kb on + strand, within SM_b21447at 1377.153 kb on + strand, within SM_b21447at 1377.153 kb on + strand, within SM_b21447at 1377.348 kb on + strand, within SM_b21447at 1377.348 kb on + strand, within SM_b21447at 1377.349 kb on - strand, within SM_b21447at 1377.367 kb on - strand, within SM_b21447at 1377.367 kb on - strand, within SM_b21447at 1377.367 kb on - strand, within SM_b21447at 1377.462 kb on + strand, within SM_b21447at 1377.462 kb on + strand, within SM_b21447at 1377.490 kb on - strand, within SM_b21447at 1377.603 kb on + strand, within SM_b21447

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,373,672 + SM_b21445 0.17 +0.4
1,373,672 + SM_b21445 0.17 -0.8
1,373,673 - SM_b21445 0.17 -0.2
1,373,673 - SM_b21445 0.17 -0.2
1,373,856 - SM_b21445 0.33 +0.2
1,374,025 + SM_b21445 0.48 -1.0
1,374,025 + SM_b21445 0.48 +0.3
1,374,026 - SM_b21445 0.48 -0.9
1,374,077 + SM_b21445 0.52 -1.1
1,374,077 + SM_b21445 0.52 +1.1
1,374,077 + SM_b21445 0.52 -2.5
1,374,077 + SM_b21445 0.52 +0.5
1,374,077 + SM_b21445 0.52 -1.7
1,374,077 + SM_b21445 0.52 -0.4
1,374,078 - SM_b21445 0.52 -4.0
1,374,078 - SM_b21445 0.52 -1.1
1,374,078 - SM_b21445 0.52 +0.1
1,374,078 - SM_b21445 0.52 -0.3
1,374,098 + SM_b21445 0.54 -1.1
1,374,099 - SM_b21445 0.54 -1.8
1,374,099 - SM_b21445 0.54 +0.2
1,374,099 - SM_b21445 0.54 -1.5
1,374,099 - SM_b21445 0.54 -3.0
1,374,212 - SM_b21445 0.64 +0.1
1,374,375 - SM_b21445 0.78 -1.6
1,374,401 - SM_b21445 0.81 -0.2
1,374,509 + +0.4
1,374,510 - -0.4
1,374,615 + +0.4
1,374,667 + +0.7
1,374,767 + -0.4
1,374,768 - -1.2
1,374,847 + SM_b21446 0.11 -2.3
1,374,847 + SM_b21446 0.11 -2.2
1,374,847 + SM_b21446 0.11 +0.1
1,374,848 - SM_b21446 0.11 -0.3
1,374,849 + SM_b21446 0.11 +1.2
1,374,850 - SM_b21446 0.11 -1.4
1,374,850 - SM_b21446 0.11 +0.3
1,374,850 - SM_b21446 0.11 -1.5
1,374,918 + SM_b21446 0.14 +0.0
1,374,918 + SM_b21446 0.14 -0.2
1,374,918 + SM_b21446 0.14 -0.3
1,374,919 - SM_b21446 0.15 +1.0
1,374,919 - SM_b21446 0.15 -0.1
1,374,926 + SM_b21446 0.15 -0.1
1,374,926 + SM_b21446 0.15 -2.2
1,374,927 - SM_b21446 0.15 +0.6
1,375,086 + SM_b21446 0.23 +2.2
1,375,086 + SM_b21446 0.23 +0.4
1,375,086 + SM_b21446 0.23 +1.6
1,375,086 + SM_b21446 0.23 -0.1
1,375,086 + SM_b21446 0.23 +0.3
1,375,086 + SM_b21446 0.23 +1.3
1,375,641 + SM_b21446 0.49 +1.1
1,375,641 + SM_b21446 0.49 -0.3
1,375,641 + SM_b21446 0.49 -0.3
1,375,641 + SM_b21446 0.49 +0.1
1,375,642 - SM_b21446 0.49 +0.2
1,375,891 - SM_b21446 0.61 -3.2
1,375,972 + SM_b21446 0.65 +0.7
1,375,972 + SM_b21446 0.65 -0.3
1,375,973 - SM_b21446 0.65 +0.7
1,375,977 + SM_b21446 0.65 +0.6
1,375,977 + SM_b21446 0.65 +0.4
1,375,978 - SM_b21446 0.65 -1.1
1,376,014 - SM_b21446 0.67 +0.3
1,376,067 + SM_b21446 0.69 +0.6
1,376,214 + SM_b21446 0.76 +0.8
1,376,215 - SM_b21446 0.76 +0.1
1,376,215 - SM_b21446 0.76 +0.2
1,376,356 + SM_b21446 0.83 +2.0
1,376,356 + SM_b21446 0.83 +1.2
1,376,357 - SM_b21446 0.83 -0.3
1,376,357 - SM_b21446 0.83 +0.0
1,376,463 + SM_b21446 0.88 -0.1
1,376,487 + SM_b21446 0.89 -2.3
1,376,488 - SM_b21446 0.89 +0.1
1,376,518 - +0.3
1,376,530 + +0.9
1,376,725 + -0.4
1,376,725 + +0.1
1,376,726 - +1.3
1,376,848 + +1.2
1,376,848 + +0.9
1,376,848 + -0.3
1,376,849 - +0.2
1,376,853 - +0.0
1,377,125 + SM_b21447 0.15 +0.5
1,377,153 + SM_b21447 0.17 -0.7
1,377,153 + SM_b21447 0.17 -0.4
1,377,348 + SM_b21447 0.27 -2.1
1,377,348 + SM_b21447 0.27 +1.6
1,377,349 - SM_b21447 0.27 -0.1
1,377,367 - SM_b21447 0.28 +0.1
1,377,367 - SM_b21447 0.28 -1.0
1,377,367 - SM_b21447 0.28 -0.0
1,377,462 + SM_b21447 0.34 -1.2
1,377,462 + SM_b21447 0.34 +0.1
1,377,490 - SM_b21447 0.35 -0.2
1,377,603 + SM_b21447 0.42 -0.1

Or see this region's nucleotide sequence