Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20623

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20622 and SM_b20623 are separated by 135 nucleotidesSM_b20623 and SM_b20624 overlap by 4 nucleotides SM_b20622: SM_b20622 - sugar uptake ABC transporter ATP-binding protein, at 1,641,558 to 1,643,081 _b20622 SM_b20623: SM_b20623 - methylthioribose kinase, at 1,643,217 to 1,644,488 _b20623 SM_b20624: SM_b20624 - methylthioribose-1-phosphate isomerase, at 1,644,485 to 1,645,579 _b20624 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1642.378 kb on + strand, within SM_b20622at 1642.378 kb on + strandat 1642.478 kb on + strand, within SM_b20622at 1642.478 kb on + strand, within SM_b20622at 1642.479 kb on - strand, within SM_b20622at 1642.480 kb on + strand, within SM_b20622at 1642.480 kb on + strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.481 kb on - strand, within SM_b20622at 1642.577 kb on + strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1642.916 kb on - strand, within SM_b20622at 1643.105 kb on + strandat 1643.105 kb on + strandat 1643.106 kb on - strandat 1643.160 kb on + strandat 1643.160 kb on + strandat 1643.161 kb on - strandat 1643.161 kb on - strandat 1643.217 kb on - strandat 1643.412 kb on + strand, within SM_b20623at 1643.412 kb on + strand, within SM_b20623at 1643.413 kb on - strand, within SM_b20623at 1643.413 kb on - strand, within SM_b20623at 1643.563 kb on - strand, within SM_b20623at 1643.563 kb on - strand, within SM_b20623at 1643.621 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.623 kb on + strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.624 kb on - strand, within SM_b20623at 1643.968 kb on + strand, within SM_b20623at 1643.969 kb on - strand, within SM_b20623at 1643.988 kb on + strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1643.989 kb on - strand, within SM_b20623at 1644.042 kb on + strand, within SM_b20623at 1644.042 kb on + strand, within SM_b20623at 1644.043 kb on - strand, within SM_b20623at 1644.099 kb on + strand, within SM_b20623at 1644.261 kb on - strand, within SM_b20623at 1644.506 kb on + strandat 1644.507 kb on - strandat 1644.511 kb on + strandat 1644.512 kb on - strandat 1644.512 kb on - strandat 1645.004 kb on + strandat 1645.029 kb on - strand, within SM_b20624at 1645.064 kb on + strand, within SM_b20624at 1645.064 kb on + strand, within SM_b20624at 1645.065 kb on - strand, within SM_b20624at 1645.301 kb on + strand, within SM_b20624at 1645.302 kb on - strand, within SM_b20624

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,642,378 + SM_b20622 0.54 -1.9
1,642,378 + +1.7
1,642,478 + SM_b20622 0.60 -1.5
1,642,478 + SM_b20622 0.60 -0.8
1,642,479 - SM_b20622 0.60 +1.7
1,642,480 + SM_b20622 0.60 +0.3
1,642,480 + SM_b20622 0.60 +0.2
1,642,481 - SM_b20622 0.61 -1.9
1,642,481 - SM_b20622 0.61 -3.2
1,642,481 - SM_b20622 0.61 -0.4
1,642,481 - SM_b20622 0.61 -0.8
1,642,481 - SM_b20622 0.61 -1.6
1,642,481 - SM_b20622 0.61 +0.1
1,642,577 + SM_b20622 0.67 -1.2
1,642,916 - SM_b20622 0.89 -1.9
1,642,916 - SM_b20622 0.89 -0.2
1,642,916 - SM_b20622 0.89 -0.4
1,643,105 + -0.5
1,643,105 + +1.5
1,643,106 - +0.9
1,643,160 + -0.7
1,643,160 + -2.4
1,643,161 - -1.6
1,643,161 - -0.8
1,643,217 - +0.4
1,643,412 + SM_b20623 0.15 -0.1
1,643,412 + SM_b20623 0.15 -0.4
1,643,413 - SM_b20623 0.15 -0.1
1,643,413 - SM_b20623 0.15 -2.6
1,643,563 - SM_b20623 0.27 -0.3
1,643,563 - SM_b20623 0.27 +1.1
1,643,621 + SM_b20623 0.32 -1.7
1,643,623 + SM_b20623 0.32 +2.1
1,643,623 + SM_b20623 0.32 +0.1
1,643,623 + SM_b20623 0.32 +2.2
1,643,623 + SM_b20623 0.32 -0.5
1,643,623 + SM_b20623 0.32 +0.6
1,643,623 + SM_b20623 0.32 +1.0
1,643,623 + SM_b20623 0.32 -0.2
1,643,623 + SM_b20623 0.32 -0.7
1,643,623 + SM_b20623 0.32 -0.1
1,643,624 - SM_b20623 0.32 +0.1
1,643,624 - SM_b20623 0.32 +0.0
1,643,624 - SM_b20623 0.32 -0.2
1,643,968 + SM_b20623 0.59 +0.1
1,643,969 - SM_b20623 0.59 -0.1
1,643,988 + SM_b20623 0.61 -4.6
1,643,989 - SM_b20623 0.61 -0.6
1,643,989 - SM_b20623 0.61 +0.3
1,643,989 - SM_b20623 0.61 -0.5
1,644,042 + SM_b20623 0.65 +0.7
1,644,042 + SM_b20623 0.65 +0.4
1,644,043 - SM_b20623 0.65 +1.2
1,644,099 + SM_b20623 0.69 +2.7
1,644,261 - SM_b20623 0.82 +0.4
1,644,506 + -1.1
1,644,507 - +2.8
1,644,511 + +1.5
1,644,512 - -1.0
1,644,512 - -1.1
1,645,004 + +0.1
1,645,029 - SM_b20624 0.50 -1.1
1,645,064 + SM_b20624 0.53 +1.6
1,645,064 + SM_b20624 0.53 +1.1
1,645,065 - SM_b20624 0.53 -0.8
1,645,301 + SM_b20624 0.75 -0.1
1,645,302 - SM_b20624 0.75 -0.7

Or see this region's nucleotide sequence