Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20786 and SM_b20787 are separated by 6 nucleotides SM_b20787 and SM_b20568 are separated by 101 nucleotides SM_b20568 and SM_b20569 are separated by 139 nucleotides SM_b20569 and SM_b20570 are separated by 10 nucleotides
SM_b20786: SM_b20786 - branched-chain amino acid ABC transporter permease, at 1,578,587 to 1,579,588
_b20786
SM_b20787: SM_b20787 - branched-chain amino acid ABC transporter permease, at 1,579,595 to 1,580,458
_b20787
SM_b20568: SM_b20568 - amino acid ABC transporter substrate-binding protein, at 1,580,560 to 1,581,771
_b20568
SM_b20569: SM_b20569 - ABC transporter ATP-binding protein, at 1,581,911 to 1,582,681
_b20569
SM_b20570: SM_b20570 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,582,692 to 1,583,684
_b20570
Position (kb)
1580
1581
1582 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1579.596 kb on + strand at 1579.596 kb on + strand at 1579.596 kb on + strand at 1579.597 kb on - strand at 1579.597 kb on - strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.600 kb on + strand at 1579.601 kb on - strand at 1579.601 kb on - strand at 1579.601 kb on - strand at 1579.656 kb on + strand at 1579.656 kb on + strand at 1579.657 kb on - strand at 1579.689 kb on + strand, within SM_b20787 at 1579.703 kb on - strand, within SM_b20787 at 1579.795 kb on - strand, within SM_b20787 at 1579.795 kb on - strand, within SM_b20787 at 1579.806 kb on + strand, within SM_b20787 at 1579.806 kb on + strand, within SM_b20787 at 1579.807 kb on - strand, within SM_b20787 at 1579.809 kb on + strand, within SM_b20787 at 1579.890 kb on + strand, within SM_b20787 at 1579.891 kb on - strand, within SM_b20787 at 1580.030 kb on + strand, within SM_b20787 at 1580.124 kb on + strand, within SM_b20787 at 1580.125 kb on - strand, within SM_b20787 at 1580.196 kb on + strand, within SM_b20787 at 1580.196 kb on + strand, within SM_b20787 at 1580.197 kb on - strand, within SM_b20787 at 1580.209 kb on - strand, within SM_b20787 at 1580.304 kb on + strand, within SM_b20787 at 1580.305 kb on - strand, within SM_b20787 at 1580.315 kb on - strand, within SM_b20787 at 1580.316 kb on + strand, within SM_b20787 at 1580.438 kb on + strand at 1580.470 kb on - strand at 1580.544 kb on + strand at 1580.545 kb on - strand at 1580.545 kb on - strand at 1580.621 kb on + strand at 1580.624 kb on + strand at 1580.624 kb on + strand at 1580.625 kb on - strand at 1580.625 kb on - strand at 1580.660 kb on + strand at 1580.677 kb on - strand at 1580.796 kb on - strand, within SM_b20568 at 1580.816 kb on + strand, within SM_b20568 at 1580.918 kb on + strand, within SM_b20568 at 1581.443 kb on + strand, within SM_b20568 at 1581.443 kb on + strand, within SM_b20568 at 1581.444 kb on - strand, within SM_b20568 at 1581.458 kb on + strand, within SM_b20568 at 1581.459 kb on - strand, within SM_b20568 at 1581.475 kb on + strand, within SM_b20568 at 1581.476 kb on - strand, within SM_b20568 at 1581.536 kb on + strand, within SM_b20568 at 1581.536 kb on + strand, within SM_b20568 at 1581.537 kb on - strand, within SM_b20568 at 1581.585 kb on + strand, within SM_b20568 at 1581.586 kb on - strand, within SM_b20568 at 1581.586 kb on - strand, within SM_b20568 at 1581.587 kb on + strand, within SM_b20568 at 1581.588 kb on - strand, within SM_b20568 at 1581.588 kb on - strand, within SM_b20568 at 1581.731 kb on + strand at 1581.732 kb on - strand at 1581.783 kb on - strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.843 kb on + strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.844 kb on - strand at 1581.912 kb on + strand at 1581.913 kb on - strand at 1582.038 kb on - strand, within SM_b20569 at 1582.059 kb on + strand, within SM_b20569 at 1582.059 kb on + strand, within SM_b20569 at 1582.059 kb on + strand, within SM_b20569 at 1582.060 kb on - strand, within SM_b20569 at 1582.060 kb on - strand, within SM_b20569 at 1582.060 kb on - strand, within SM_b20569 at 1582.205 kb on + strand, within SM_b20569 at 1582.254 kb on - strand, within SM_b20569 at 1582.305 kb on + strand, within SM_b20569 at 1582.305 kb on + strand, within SM_b20569 at 1582.306 kb on - strand, within SM_b20569 at 1582.306 kb on - strand, within SM_b20569 at 1582.590 kb on - strand, within SM_b20569 at 1582.747 kb on + strand at 1582.748 kb on - strand at 1582.748 kb on - strand at 1582.748 kb on - strand at 1582.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,579,596 + -0.3 1,579,596 + +1.4 1,579,596 + +0.2 1,579,597 - +0.2 1,579,597 - -0.6 1,579,600 + +0.7 1,579,600 + -0.6 1,579,600 + -3.0 1,579,600 + -1.5 1,579,600 + -0.4 1,579,601 - +0.5 1,579,601 - -2.8 1,579,601 - +1.0 1,579,656 + +0.8 1,579,656 + +0.1 1,579,657 - -2.1 1,579,689 + SM_b20787 0.11 -0.0 1,579,703 - SM_b20787 0.12 -0.2 1,579,795 - SM_b20787 0.23 -1.9 1,579,795 - SM_b20787 0.23 -0.2 1,579,806 + SM_b20787 0.24 +0.2 1,579,806 + SM_b20787 0.24 +0.2 1,579,807 - SM_b20787 0.25 +0.1 1,579,809 + SM_b20787 0.25 +0.0 1,579,890 + SM_b20787 0.34 +2.2 1,579,891 - SM_b20787 0.34 -0.9 1,580,030 + SM_b20787 0.50 +0.2 1,580,124 + SM_b20787 0.61 -0.1 1,580,125 - SM_b20787 0.61 +0.3 1,580,196 + SM_b20787 0.70 -2.8 1,580,196 + SM_b20787 0.70 +1.6 1,580,197 - SM_b20787 0.70 +0.7 1,580,209 - SM_b20787 0.71 -2.2 1,580,304 + SM_b20787 0.82 +0.1 1,580,305 - SM_b20787 0.82 +0.8 1,580,315 - SM_b20787 0.83 +1.8 1,580,316 + SM_b20787 0.83 -0.6 1,580,438 + -0.7 1,580,470 - +1.5 1,580,544 + -3.0 1,580,545 - -1.8 1,580,545 - +1.3 1,580,621 + +0.9 1,580,624 + -0.2 1,580,624 + +0.3 1,580,625 - +0.2 1,580,625 - +0.1 1,580,660 + +0.4 1,580,677 - +0.8 1,580,796 - SM_b20568 0.19 +0.2 1,580,816 + SM_b20568 0.21 +0.3 1,580,918 + SM_b20568 0.30 -3.3 1,581,443 + SM_b20568 0.73 +0.5 1,581,443 + SM_b20568 0.73 -2.0 1,581,444 - SM_b20568 0.73 -2.8 1,581,458 + SM_b20568 0.74 -1.5 1,581,459 - SM_b20568 0.74 +0.1 1,581,475 + SM_b20568 0.75 -1.3 1,581,476 - SM_b20568 0.76 -3.0 1,581,536 + SM_b20568 0.81 +0.4 1,581,536 + SM_b20568 0.81 -1.5 1,581,537 - SM_b20568 0.81 -2.2 1,581,585 + SM_b20568 0.85 -1.5 1,581,586 - SM_b20568 0.85 -0.2 1,581,586 - SM_b20568 0.85 -2.8 1,581,587 + SM_b20568 0.85 +0.0 1,581,588 - SM_b20568 0.85 -3.2 1,581,588 - SM_b20568 0.85 +2.9 1,581,731 + -0.1 1,581,732 - +0.1 1,581,783 - -0.6 1,581,843 + +0.7 1,581,843 + -3.1 1,581,843 + -1.1 1,581,843 + -0.7 1,581,843 + +1.7 1,581,843 + -4.7 1,581,843 + +1.2 1,581,844 - +1.2 1,581,844 - -0.5 1,581,844 - -3.3 1,581,844 - +0.4 1,581,844 - -1.1 1,581,844 - -0.0 1,581,844 - -2.9 1,581,844 - -1.6 1,581,844 - +0.3 1,581,844 - +0.3 1,581,844 - +0.8 1,581,912 + +0.6 1,581,913 - -1.3 1,582,038 - SM_b20569 0.16 +0.1 1,582,059 + SM_b20569 0.19 +0.8 1,582,059 + SM_b20569 0.19 +0.6 1,582,059 + SM_b20569 0.19 -0.1 1,582,060 - SM_b20569 0.19 +0.4 1,582,060 - SM_b20569 0.19 -2.0 1,582,060 - SM_b20569 0.19 -0.4 1,582,205 + SM_b20569 0.38 -0.8 1,582,254 - SM_b20569 0.44 +0.0 1,582,305 + SM_b20569 0.51 +0.6 1,582,305 + SM_b20569 0.51 -0.2 1,582,306 - SM_b20569 0.51 -1.5 1,582,306 - SM_b20569 0.51 -0.7 1,582,590 - SM_b20569 0.88 +2.4 1,582,747 + -2.0 1,582,748 - +0.3 1,582,748 - +0.7 1,582,748 - +0.3 1,582,748 - +0.5
Or see this region's nucleotide sequence