Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20383 and SM_b20384 are separated by 105 nucleotides SM_b20384 and SM_b20385 are separated by 13 nucleotides SM_b20385 and SM_b20386 overlap by 4 nucleotides
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
SM_b20385: SM_b20385 - hypothetical protein, at 396,404 to 397,132
_b20385
SM_b20386: SM_b20386 - hypothetical protein, at 397,129 to 398,865
_b20386
Position (kb) 395
396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 394.563 kb on + strand, within SM_b20383 at 394.564 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.877 kb on + strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 395.104 kb on + strand, within SM_b20383 at 395.105 kb on - strand, within SM_b20383 at 395.219 kb on + strand at 395.219 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.353 kb on - strand at 395.353 kb on - strand at 395.531 kb on - strand, within SM_b20384 at 395.531 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.771 kb on - strand, within SM_b20384 at 395.844 kb on + strand, within SM_b20384 at 395.850 kb on + strand, within SM_b20384 at 396.146 kb on + strand, within SM_b20384 at 396.321 kb on - strand at 396.544 kb on - strand, within SM_b20385 at 396.996 kb on + strand, within SM_b20385 at 396.996 kb on + strand at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.053 kb on - strand, within SM_b20385 at 397.132 kb on + strand at 397.151 kb on + strand at 397.151 kb on + strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.293 kb on + strand at 397.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 394,563 + SM_b20383 0.30 +4.2 394,564 - SM_b20383 0.30 -1.4 394,722 - SM_b20383 0.45 -1.0 394,722 - SM_b20383 0.45 -1.9 394,877 + SM_b20383 0.59 -0.1 394,878 - SM_b20383 0.59 -0.2 394,878 - SM_b20383 0.59 -2.9 395,104 + SM_b20383 0.80 +0.2 395,105 - SM_b20383 0.81 -0.3 395,219 + +2.1 395,219 + +0.1 395,352 + -0.9 395,352 + +0.7 395,352 + +0.3 395,353 - +0.5 395,353 - +2.2 395,531 - SM_b20384 0.12 +0.8 395,531 - SM_b20384 0.12 -0.3 395,601 - SM_b20384 0.19 -2.4 395,601 - SM_b20384 0.19 -0.8 395,771 - SM_b20384 0.36 -1.7 395,844 + SM_b20384 0.44 -0.1 395,850 + SM_b20384 0.44 -3.8 396,146 + SM_b20384 0.75 +0.5 396,321 - +1.4 396,544 - SM_b20385 0.19 +1.4 396,996 + SM_b20385 0.81 -0.1 396,996 + +0.8 397,052 + SM_b20385 0.89 +0.3 397,052 + SM_b20385 0.89 +1.3 397,052 + SM_b20385 0.89 +0.3 397,053 - SM_b20385 0.89 -2.6 397,132 + -0.3 397,151 + -1.8 397,151 + -3.2 397,152 - -1.5 397,152 - +0.8 397,152 - +0.4 397,152 - -0.2 397,293 + -1.4 397,293 + +0.2
Or see this region's nucleotide sequence