Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20244

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20243 and SM_b20244 overlap by 4 nucleotidesSM_b20244 and SM_b20245 overlap by 4 nucleotides SM_b20243: SM_b20243 - glycosyltransferase, at 247,592 to 248,743 _b20243 SM_b20244: SM_b20244 - CDP-tyvelose-2-epimerase, at 248,740 to 249,861 _b20244 SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964 _b20245 Position (kb) 248 249 250Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 247.819 kb on - strand, within SM_b20243at 247.894 kb on - strand, within SM_b20243at 248.042 kb on + strand, within SM_b20243at 248.043 kb on - strand, within SM_b20243at 248.043 kb on - strand, within SM_b20243at 248.043 kb on - strand, within SM_b20243at 248.158 kb on + strand, within SM_b20243at 248.161 kb on - strand, within SM_b20243at 248.161 kb on - strand, within SM_b20243at 248.191 kb on - strand, within SM_b20243at 248.194 kb on + strand, within SM_b20243at 248.627 kb on - strand, within SM_b20243at 248.627 kb on - strand, within SM_b20243at 248.627 kb on - strand, within SM_b20243at 248.632 kb on - strandat 248.632 kb on - strandat 248.811 kb on - strandat 248.880 kb on + strand, within SM_b20244at 249.119 kb on + strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.120 kb on - strand, within SM_b20244at 249.207 kb on - strand, within SM_b20244at 249.262 kb on + strand, within SM_b20244at 249.263 kb on - strand, within SM_b20244at 249.269 kb on + strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.270 kb on - strand, within SM_b20244at 249.300 kb on - strand, within SM_b20244at 249.306 kb on + strand, within SM_b20244at 249.371 kb on + strand, within SM_b20244at 249.416 kb on + strand, within SM_b20244at 249.416 kb on + strand, within SM_b20244at 250.140 kb on + strand, within SM_b20245at 250.140 kb on + strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.141 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.143 kb on - strand, within SM_b20245at 250.305 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.307 kb on - strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.389 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.391 kb on + strand, within SM_b20245at 250.392 kb on - strand, within SM_b20245at 250.414 kb on + strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.415 kb on - strand, within SM_b20245at 250.430 kb on - strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.571 kb on + strand, within SM_b20245at 250.572 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.580 kb on - strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.794 kb on + strand, within SM_b20245at 250.795 kb on - strand, within SM_b20245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
247,819 - SM_b20243 0.20 -1.2
247,894 - SM_b20243 0.26 +0.4
248,042 + SM_b20243 0.39 -1.0
248,043 - SM_b20243 0.39 +0.1
248,043 - SM_b20243 0.39 -0.6
248,043 - SM_b20243 0.39 +0.1
248,158 + SM_b20243 0.49 -0.6
248,161 - SM_b20243 0.49 +0.1
248,161 - SM_b20243 0.49 +1.0
248,191 - SM_b20243 0.52 -2.6
248,194 + SM_b20243 0.52 -0.5
248,627 - SM_b20243 0.90 -3.3
248,627 - SM_b20243 0.90 -0.8
248,627 - SM_b20243 0.90 -0.6
248,632 - -0.8
248,632 - +0.8
248,811 - -0.9
248,880 + SM_b20244 0.12 -0.5
249,119 + SM_b20244 0.34 -2.2
249,120 - SM_b20244 0.34 +0.9
249,120 - SM_b20244 0.34 -0.3
249,120 - SM_b20244 0.34 +0.2
249,207 - SM_b20244 0.42 +0.1
249,262 + SM_b20244 0.47 -4.2
249,263 - SM_b20244 0.47 -0.4
249,269 + SM_b20244 0.47 -0.7
249,270 - SM_b20244 0.47 +0.8
249,270 - SM_b20244 0.47 -2.8
249,270 - SM_b20244 0.47 -2.1
249,270 - SM_b20244 0.47 -0.4
249,300 - SM_b20244 0.50 -0.1
249,306 + SM_b20244 0.50 +0.1
249,371 + SM_b20244 0.56 +0.2
249,416 + SM_b20244 0.60 -0.2
249,416 + SM_b20244 0.60 -3.0
250,140 + SM_b20245 0.25 -1.2
250,140 + SM_b20245 0.25 -0.2
250,141 - SM_b20245 0.26 +0.6
250,141 - SM_b20245 0.26 -1.7
250,141 - SM_b20245 0.26 -1.0
250,141 - SM_b20245 0.26 -2.5
250,141 - SM_b20245 0.26 -1.7
250,143 - SM_b20245 0.26 -0.7
250,143 - SM_b20245 0.26 -2.5
250,143 - SM_b20245 0.26 -0.8
250,305 - SM_b20245 0.40 -0.8
250,307 - SM_b20245 0.41 +1.2
250,307 - SM_b20245 0.41 -1.5
250,389 + SM_b20245 0.48 -0.0
250,389 + SM_b20245 0.48 +0.2
250,391 + SM_b20245 0.48 -0.1
250,391 + SM_b20245 0.48 -1.3
250,392 - SM_b20245 0.48 +1.9
250,414 + SM_b20245 0.50 +0.4
250,415 - SM_b20245 0.50 -1.3
250,415 - SM_b20245 0.50 +0.2
250,430 - SM_b20245 0.52 +0.1
250,571 + SM_b20245 0.64 +0.5
250,571 + SM_b20245 0.64 +0.6
250,571 + SM_b20245 0.64 -0.7
250,572 - SM_b20245 0.64 +1.0
250,580 - SM_b20245 0.65 -0.2
250,580 - SM_b20245 0.65 -0.6
250,580 - SM_b20245 0.65 +0.9
250,794 + SM_b20245 0.85 -0.2
250,794 + SM_b20245 0.85 +0.4
250,794 + SM_b20245 0.85 +0.8
250,795 - SM_b20245 0.85 +0.3

Or see this region's nucleotide sequence