Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26600 and RR42_RS26605 are separated by 601 nucleotides RR42_RS26605 and RR42_RS26610 are separated by 116 nucleotides RR42_RS26610 and RR42_RS26615 are separated by 69 nucleotides
RR42_RS26600: RR42_RS26600 - hypothetical protein, at 1,322,928 to 1,323,380
_RS26600
RR42_RS26605: RR42_RS26605 - hypothetical protein, at 1,323,982 to 1,324,293
_RS26605
RR42_RS26610: RR42_RS26610 - hypothetical protein, at 1,324,410 to 1,325,219
_RS26610
RR42_RS26615: RR42_RS26615 - hypothetical protein, at 1,325,289 to 1,325,756
_RS26615
Position (kb)
1323
1324
1325 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1323.087 kb on + strand, within RR42_RS26600 at 1323.087 kb on + strand, within RR42_RS26600 at 1323.140 kb on - strand, within RR42_RS26600 at 1323.193 kb on + strand, within RR42_RS26600 at 1323.193 kb on + strand, within RR42_RS26600 at 1323.209 kb on - strand, within RR42_RS26600 at 1323.209 kb on - strand, within RR42_RS26600 at 1323.229 kb on - strand, within RR42_RS26600 at 1323.229 kb on - strand, within RR42_RS26600 at 1323.250 kb on + strand, within RR42_RS26600 at 1323.250 kb on + strand, within RR42_RS26600 at 1323.250 kb on + strand, within RR42_RS26600 at 1323.250 kb on + strand, within RR42_RS26600 at 1323.251 kb on - strand, within RR42_RS26600 at 1323.283 kb on + strand, within RR42_RS26600 at 1323.283 kb on + strand, within RR42_RS26600 at 1323.283 kb on + strand, within RR42_RS26600 at 1323.284 kb on - strand, within RR42_RS26600 at 1323.284 kb on - strand, within RR42_RS26600 at 1323.284 kb on - strand, within RR42_RS26600 at 1323.284 kb on - strand, within RR42_RS26600 at 1323.396 kb on + strand at 1323.396 kb on + strand at 1323.396 kb on + strand at 1323.396 kb on + strand at 1323.396 kb on + strand at 1323.396 kb on + strand at 1323.404 kb on - strand at 1323.404 kb on - strand at 1323.418 kb on - strand at 1323.439 kb on - strand at 1323.446 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.453 kb on - strand at 1323.471 kb on + strand at 1323.487 kb on + strand at 1323.487 kb on + strand at 1323.501 kb on + strand at 1323.508 kb on + strand at 1323.508 kb on + strand at 1323.508 kb on + strand at 1323.515 kb on + strand at 1323.661 kb on + strand at 1323.741 kb on + strand at 1323.741 kb on + strand at 1323.742 kb on - strand at 1323.742 kb on - strand at 1323.742 kb on - strand at 1323.838 kb on + strand at 1323.984 kb on - strand at 1323.984 kb on - strand at 1324.005 kb on + strand at 1324.129 kb on + strand, within RR42_RS26605 at 1324.129 kb on + strand, within RR42_RS26605 at 1324.216 kb on - strand, within RR42_RS26605 at 1324.216 kb on - strand, within RR42_RS26605 at 1324.248 kb on - strand, within RR42_RS26605 at 1324.248 kb on - strand, within RR42_RS26605 at 1324.267 kb on + strand at 1324.267 kb on + strand at 1324.267 kb on + strand at 1324.267 kb on + strand at 1324.268 kb on - strand at 1324.268 kb on - strand at 1324.268 kb on - strand at 1324.268 kb on - strand at 1324.284 kb on + strand at 1324.325 kb on - strand at 1324.325 kb on - strand at 1324.325 kb on - strand at 1324.328 kb on + strand at 1324.342 kb on + strand at 1324.343 kb on - strand at 1324.371 kb on + strand at 1324.412 kb on - strand at 1324.629 kb on - strand, within RR42_RS26610 at 1324.629 kb on - strand, within RR42_RS26610 at 1324.629 kb on - strand, within RR42_RS26610 at 1324.741 kb on + strand, within RR42_RS26610 at 1324.742 kb on - strand, within RR42_RS26610 at 1324.742 kb on - strand, within RR42_RS26610 at 1324.957 kb on + strand, within RR42_RS26610 at 1325.101 kb on + strand, within RR42_RS26610 at 1325.102 kb on - strand, within RR42_RS26610 at 1325.140 kb on - strand at 1325.259 kb on + strand at 1325.259 kb on + strand at 1325.290 kb on + strand at 1325.290 kb on + strand at 1325.291 kb on - strand at 1325.292 kb on + strand at 1325.292 kb on + strand at 1325.292 kb on + strand at 1325.293 kb on - strand at 1325.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 1,323,087 + RR42_RS26600 0.35 +0.5 1,323,087 + RR42_RS26600 0.35 +0.5 1,323,140 - RR42_RS26600 0.47 -0.2 1,323,193 + RR42_RS26600 0.58 +0.1 1,323,193 + RR42_RS26600 0.58 -0.3 1,323,209 - RR42_RS26600 0.62 +0.3 1,323,209 - RR42_RS26600 0.62 +0.4 1,323,229 - RR42_RS26600 0.66 -0.0 1,323,229 - RR42_RS26600 0.66 -0.7 1,323,250 + RR42_RS26600 0.71 -0.1 1,323,250 + RR42_RS26600 0.71 -0.4 1,323,250 + RR42_RS26600 0.71 -0.5 1,323,250 + RR42_RS26600 0.71 -2.7 1,323,251 - RR42_RS26600 0.71 -0.2 1,323,283 + RR42_RS26600 0.78 +0.6 1,323,283 + RR42_RS26600 0.78 +0.6 1,323,283 + RR42_RS26600 0.78 -0.2 1,323,284 - RR42_RS26600 0.79 -0.2 1,323,284 - RR42_RS26600 0.79 +1.2 1,323,284 - RR42_RS26600 0.79 -0.8 1,323,284 - RR42_RS26600 0.79 +0.3 1,323,396 + +0.3 1,323,396 + +0.3 1,323,396 + +0.9 1,323,396 + +0.6 1,323,396 + +0.5 1,323,396 + -0.4 1,323,404 - -0.5 1,323,404 - +0.8 1,323,418 - -0.3 1,323,439 - +0.5 1,323,446 - -0.6 1,323,453 - -0.7 1,323,453 - +0.1 1,323,453 - +0.1 1,323,453 - -0.7 1,323,453 - -1.4 1,323,453 - +0.6 1,323,453 - -0.3 1,323,471 + -0.7 1,323,487 + -0.5 1,323,487 + -0.1 1,323,501 + -0.4 1,323,508 + -0.7 1,323,508 + +0.5 1,323,508 + +0.5 1,323,515 + +0.0 1,323,661 + -0.1 1,323,741 + -1.4 1,323,741 + -0.0 1,323,742 - +0.1 1,323,742 - -2.4 1,323,742 - -0.2 1,323,838 + -0.6 1,323,984 - -0.2 1,323,984 - +0.6 1,324,005 + +2.3 1,324,129 + RR42_RS26605 0.47 -0.0 1,324,129 + RR42_RS26605 0.47 +0.8 1,324,216 - RR42_RS26605 0.75 +1.8 1,324,216 - RR42_RS26605 0.75 -0.3 1,324,248 - RR42_RS26605 0.85 +0.9 1,324,248 - RR42_RS26605 0.85 +0.4 1,324,267 + -1.0 1,324,267 + -0.5 1,324,267 + -0.5 1,324,267 + +0.4 1,324,268 - -0.4 1,324,268 - -0.5 1,324,268 - +0.0 1,324,268 - +0.3 1,324,284 + -0.6 1,324,325 - +0.2 1,324,325 - -0.7 1,324,325 - -0.4 1,324,328 + -0.5 1,324,342 + -2.4 1,324,343 - +0.3 1,324,371 + -0.8 1,324,412 - +0.0 1,324,629 - RR42_RS26610 0.27 +0.4 1,324,629 - RR42_RS26610 0.27 +0.3 1,324,629 - RR42_RS26610 0.27 -0.7 1,324,741 + RR42_RS26610 0.41 -0.1 1,324,742 - RR42_RS26610 0.41 -0.4 1,324,742 - RR42_RS26610 0.41 -0.4 1,324,957 + RR42_RS26610 0.68 +0.5 1,325,101 + RR42_RS26610 0.85 +0.3 1,325,102 - RR42_RS26610 0.85 -1.2 1,325,140 - +0.3 1,325,259 + +0.7 1,325,259 + +0.8 1,325,290 + -1.5 1,325,290 + -0.9 1,325,291 - -2.2 1,325,292 + -0.6 1,325,292 + +0.8 1,325,292 + +1.2 1,325,293 - +0.1 1,325,293 - -0.2
Or see this region's nucleotide sequence