Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26605

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26600 and RR42_RS26605 are separated by 601 nucleotidesRR42_RS26605 and RR42_RS26610 are separated by 116 nucleotidesRR42_RS26610 and RR42_RS26615 are separated by 69 nucleotides RR42_RS26600: RR42_RS26600 - hypothetical protein, at 1,322,928 to 1,323,380 _RS26600 RR42_RS26605: RR42_RS26605 - hypothetical protein, at 1,323,982 to 1,324,293 _RS26605 RR42_RS26610: RR42_RS26610 - hypothetical protein, at 1,324,410 to 1,325,219 _RS26610 RR42_RS26615: RR42_RS26615 - hypothetical protein, at 1,325,289 to 1,325,756 _RS26615 Position (kb) 1323 1324 1325Strain fitness (log2 ratio) -2 -1 0 1 2at 1323.087 kb on + strand, within RR42_RS26600at 1323.087 kb on + strand, within RR42_RS26600at 1323.140 kb on - strand, within RR42_RS26600at 1323.193 kb on + strand, within RR42_RS26600at 1323.193 kb on + strand, within RR42_RS26600at 1323.209 kb on - strand, within RR42_RS26600at 1323.209 kb on - strand, within RR42_RS26600at 1323.229 kb on - strand, within RR42_RS26600at 1323.229 kb on - strand, within RR42_RS26600at 1323.250 kb on + strand, within RR42_RS26600at 1323.250 kb on + strand, within RR42_RS26600at 1323.250 kb on + strand, within RR42_RS26600at 1323.250 kb on + strand, within RR42_RS26600at 1323.251 kb on - strand, within RR42_RS26600at 1323.283 kb on + strand, within RR42_RS26600at 1323.283 kb on + strand, within RR42_RS26600at 1323.283 kb on + strand, within RR42_RS26600at 1323.284 kb on - strand, within RR42_RS26600at 1323.284 kb on - strand, within RR42_RS26600at 1323.284 kb on - strand, within RR42_RS26600at 1323.284 kb on - strand, within RR42_RS26600at 1323.396 kb on + strandat 1323.396 kb on + strandat 1323.396 kb on + strandat 1323.396 kb on + strandat 1323.396 kb on + strandat 1323.396 kb on + strandat 1323.404 kb on - strandat 1323.404 kb on - strandat 1323.418 kb on - strandat 1323.439 kb on - strandat 1323.446 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.453 kb on - strandat 1323.471 kb on + strandat 1323.487 kb on + strandat 1323.487 kb on + strandat 1323.501 kb on + strandat 1323.508 kb on + strandat 1323.508 kb on + strandat 1323.508 kb on + strandat 1323.515 kb on + strandat 1323.661 kb on + strandat 1323.741 kb on + strandat 1323.741 kb on + strandat 1323.742 kb on - strandat 1323.742 kb on - strandat 1323.742 kb on - strandat 1323.838 kb on + strandat 1323.984 kb on - strandat 1323.984 kb on - strandat 1324.005 kb on + strandat 1324.129 kb on + strand, within RR42_RS26605at 1324.129 kb on + strand, within RR42_RS26605at 1324.216 kb on - strand, within RR42_RS26605at 1324.216 kb on - strand, within RR42_RS26605at 1324.248 kb on - strand, within RR42_RS26605at 1324.248 kb on - strand, within RR42_RS26605at 1324.267 kb on + strandat 1324.267 kb on + strandat 1324.267 kb on + strandat 1324.267 kb on + strandat 1324.268 kb on - strandat 1324.268 kb on - strandat 1324.268 kb on - strandat 1324.268 kb on - strandat 1324.284 kb on + strandat 1324.325 kb on - strandat 1324.325 kb on - strandat 1324.325 kb on - strandat 1324.328 kb on + strandat 1324.342 kb on + strandat 1324.343 kb on - strandat 1324.371 kb on + strandat 1324.412 kb on - strandat 1324.629 kb on - strand, within RR42_RS26610at 1324.629 kb on - strand, within RR42_RS26610at 1324.629 kb on - strand, within RR42_RS26610at 1324.741 kb on + strand, within RR42_RS26610at 1324.742 kb on - strand, within RR42_RS26610at 1324.742 kb on - strand, within RR42_RS26610at 1324.957 kb on + strand, within RR42_RS26610at 1325.101 kb on + strand, within RR42_RS26610at 1325.102 kb on - strand, within RR42_RS26610at 1325.140 kb on - strandat 1325.259 kb on + strandat 1325.259 kb on + strandat 1325.290 kb on + strandat 1325.290 kb on + strandat 1325.291 kb on - strandat 1325.292 kb on + strandat 1325.292 kb on + strandat 1325.292 kb on + strandat 1325.293 kb on - strandat 1325.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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1,323,087 + RR42_RS26600 0.35 +0.5
1,323,087 + RR42_RS26600 0.35 +0.5
1,323,140 - RR42_RS26600 0.47 -0.2
1,323,193 + RR42_RS26600 0.58 +0.1
1,323,193 + RR42_RS26600 0.58 -0.3
1,323,209 - RR42_RS26600 0.62 +0.3
1,323,209 - RR42_RS26600 0.62 +0.4
1,323,229 - RR42_RS26600 0.66 -0.0
1,323,229 - RR42_RS26600 0.66 -0.7
1,323,250 + RR42_RS26600 0.71 -0.1
1,323,250 + RR42_RS26600 0.71 -0.4
1,323,250 + RR42_RS26600 0.71 -0.5
1,323,250 + RR42_RS26600 0.71 -2.7
1,323,251 - RR42_RS26600 0.71 -0.2
1,323,283 + RR42_RS26600 0.78 +0.6
1,323,283 + RR42_RS26600 0.78 +0.6
1,323,283 + RR42_RS26600 0.78 -0.2
1,323,284 - RR42_RS26600 0.79 -0.2
1,323,284 - RR42_RS26600 0.79 +1.2
1,323,284 - RR42_RS26600 0.79 -0.8
1,323,284 - RR42_RS26600 0.79 +0.3
1,323,396 + +0.3
1,323,396 + +0.3
1,323,396 + +0.9
1,323,396 + +0.6
1,323,396 + +0.5
1,323,396 + -0.4
1,323,404 - -0.5
1,323,404 - +0.8
1,323,418 - -0.3
1,323,439 - +0.5
1,323,446 - -0.6
1,323,453 - -0.7
1,323,453 - +0.1
1,323,453 - +0.1
1,323,453 - -0.7
1,323,453 - -1.4
1,323,453 - +0.6
1,323,453 - -0.3
1,323,471 + -0.7
1,323,487 + -0.5
1,323,487 + -0.1
1,323,501 + -0.4
1,323,508 + -0.7
1,323,508 + +0.5
1,323,508 + +0.5
1,323,515 + +0.0
1,323,661 + -0.1
1,323,741 + -1.4
1,323,741 + -0.0
1,323,742 - +0.1
1,323,742 - -2.4
1,323,742 - -0.2
1,323,838 + -0.6
1,323,984 - -0.2
1,323,984 - +0.6
1,324,005 + +2.3
1,324,129 + RR42_RS26605 0.47 -0.0
1,324,129 + RR42_RS26605 0.47 +0.8
1,324,216 - RR42_RS26605 0.75 +1.8
1,324,216 - RR42_RS26605 0.75 -0.3
1,324,248 - RR42_RS26605 0.85 +0.9
1,324,248 - RR42_RS26605 0.85 +0.4
1,324,267 + -1.0
1,324,267 + -0.5
1,324,267 + -0.5
1,324,267 + +0.4
1,324,268 - -0.4
1,324,268 - -0.5
1,324,268 - +0.0
1,324,268 - +0.3
1,324,284 + -0.6
1,324,325 - +0.2
1,324,325 - -0.7
1,324,325 - -0.4
1,324,328 + -0.5
1,324,342 + -2.4
1,324,343 - +0.3
1,324,371 + -0.8
1,324,412 - +0.0
1,324,629 - RR42_RS26610 0.27 +0.4
1,324,629 - RR42_RS26610 0.27 +0.3
1,324,629 - RR42_RS26610 0.27 -0.7
1,324,741 + RR42_RS26610 0.41 -0.1
1,324,742 - RR42_RS26610 0.41 -0.4
1,324,742 - RR42_RS26610 0.41 -0.4
1,324,957 + RR42_RS26610 0.68 +0.5
1,325,101 + RR42_RS26610 0.85 +0.3
1,325,102 - RR42_RS26610 0.85 -1.2
1,325,140 - +0.3
1,325,259 + +0.7
1,325,259 + +0.8
1,325,290 + -1.5
1,325,290 + -0.9
1,325,291 - -2.2
1,325,292 + -0.6
1,325,292 + +0.8
1,325,292 + +1.2
1,325,293 - +0.1
1,325,293 - -0.2

Or see this region's nucleotide sequence