Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24205 and RR42_RS24210 are separated by 123 nucleotides RR42_RS24210 and RR42_RS24215 are separated by 227 nucleotides RR42_RS24215 and RR42_RS24220 are separated by 707 nucleotides
RR42_RS24205: RR42_RS24205 - NADH:flavin oxidoreductase, at 756,871 to 758,013
_RS24205
RR42_RS24210: RR42_RS24210 - ketosteroid isomerase, at 758,137 to 758,547
_RS24210
RR42_RS24215: RR42_RS24215 - hypothetical protein, at 758,775 to 759,290
_RS24215
RR42_RS24220: RR42_RS24220 - gentisate 1,2-dioxygenase, at 759,998 to 760,951
_RS24220
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 757.845 kb on + strand, within RR42_RS24205 at 757.845 kb on + strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.846 kb on - strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.898 kb on + strand, within RR42_RS24205 at 757.899 kb on - strand at 758.028 kb on - strand at 758.028 kb on - strand at 758.055 kb on + strand at 758.056 kb on - strand at 758.056 kb on - strand at 758.056 kb on - strand at 758.079 kb on + strand at 758.080 kb on - strand at 758.080 kb on - strand at 758.081 kb on + strand at 758.082 kb on - strand at 758.082 kb on - strand at 758.135 kb on + strand at 758.152 kb on - strand at 758.191 kb on + strand, within RR42_RS24210 at 758.191 kb on + strand, within RR42_RS24210 at 758.191 kb on + strand, within RR42_RS24210 at 758.192 kb on - strand, within RR42_RS24210 at 758.192 kb on - strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.239 kb on + strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.240 kb on - strand, within RR42_RS24210 at 758.306 kb on + strand, within RR42_RS24210 at 758.307 kb on - strand, within RR42_RS24210 at 758.307 kb on - strand, within RR42_RS24210 at 758.351 kb on - strand, within RR42_RS24210 at 758.357 kb on + strand, within RR42_RS24210 at 758.358 kb on - strand, within RR42_RS24210 at 758.358 kb on - strand, within RR42_RS24210 at 758.478 kb on - strand, within RR42_RS24210 at 758.481 kb on + strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.482 kb on - strand, within RR42_RS24210 at 758.515 kb on + strand at 758.516 kb on - strand at 758.516 kb on - strand at 758.555 kb on - strand at 758.599 kb on + strand at 758.600 kb on - strand at 758.640 kb on + strand at 758.640 kb on + strand at 758.640 kb on + strand at 758.641 kb on - strand at 758.641 kb on - strand at 758.641 kb on - strand at 758.644 kb on + strand at 758.645 kb on - strand at 758.645 kb on - strand at 758.645 kb on - strand at 758.668 kb on + strand at 758.697 kb on + strand at 758.726 kb on + strand at 758.727 kb on - strand at 758.727 kb on - strand at 758.757 kb on + strand at 758.770 kb on + strand at 758.822 kb on - strand at 759.081 kb on + strand, within RR42_RS24215 at 759.234 kb on - strand, within RR42_RS24215 at 759.234 kb on - strand, within RR42_RS24215 at 759.309 kb on + strand at 759.310 kb on - strand at 759.341 kb on - strand at 759.366 kb on + strand at 759.367 kb on - strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.424 kb on + strand at 759.425 kb on - strand at 759.425 kb on - strand at 759.425 kb on - strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.548 kb on + strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.549 kb on - strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.721 kb on - strand at 759.721 kb on - strand at 759.750 kb on + strand at 759.840 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.868 kb on + strand at 759.869 kb on - strand at 759.869 kb on - strand at 759.869 kb on - strand at 759.915 kb on + strand at 759.997 kb on + strand at 759.998 kb on - strand at 759.998 kb on - strand at 760.008 kb on - strand at 760.008 kb on - strand at 760.008 kb on - strand at 760.038 kb on + strand at 760.038 kb on + strand at 760.106 kb on - strand, within RR42_RS24220 at 760.143 kb on - strand, within RR42_RS24220 at 760.185 kb on + strand, within RR42_RS24220 at 760.217 kb on - strand, within RR42_RS24220 at 760.278 kb on - strand, within RR42_RS24220 at 760.287 kb on + strand, within RR42_RS24220
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 757,845 + RR42_RS24205 0.85 -0.6 757,845 + RR42_RS24205 0.85 -1.4 757,846 - RR42_RS24205 0.85 +0.2 757,846 - RR42_RS24205 0.85 +0.3 757,846 - RR42_RS24205 0.85 +1.1 757,846 - RR42_RS24205 0.85 -1.4 757,898 + RR42_RS24205 0.90 -0.7 757,898 + RR42_RS24205 0.90 +0.0 757,898 + RR42_RS24205 0.90 +0.2 757,899 - +0.8 758,028 - +0.4 758,028 - +0.3 758,055 + -0.9 758,056 - -0.3 758,056 - -0.1 758,056 - +0.7 758,079 + +0.8 758,080 - +0.7 758,080 - +0.7 758,081 + +0.2 758,082 - -1.1 758,082 - +0.8 758,135 + -0.5 758,152 - +0.6 758,191 + RR42_RS24210 0.13 -0.0 758,191 + RR42_RS24210 0.13 +0.7 758,191 + RR42_RS24210 0.13 +0.3 758,192 - RR42_RS24210 0.13 +0.7 758,192 - RR42_RS24210 0.13 -0.6 758,239 + RR42_RS24210 0.25 +0.2 758,239 + RR42_RS24210 0.25 -1.2 758,239 + RR42_RS24210 0.25 -0.5 758,240 - RR42_RS24210 0.25 -0.2 758,240 - RR42_RS24210 0.25 +0.2 758,240 - RR42_RS24210 0.25 -0.2 758,240 - RR42_RS24210 0.25 -0.4 758,306 + RR42_RS24210 0.41 -0.2 758,307 - RR42_RS24210 0.41 +0.4 758,307 - RR42_RS24210 0.41 +0.2 758,351 - RR42_RS24210 0.52 -0.4 758,357 + RR42_RS24210 0.54 -0.6 758,358 - RR42_RS24210 0.54 +0.5 758,358 - RR42_RS24210 0.54 -0.1 758,478 - RR42_RS24210 0.83 -1.1 758,481 + RR42_RS24210 0.84 -0.0 758,482 - RR42_RS24210 0.84 +1.2 758,482 - RR42_RS24210 0.84 -0.5 758,482 - RR42_RS24210 0.84 -0.1 758,482 - RR42_RS24210 0.84 +0.2 758,482 - RR42_RS24210 0.84 -0.1 758,515 + -0.2 758,516 - -0.2 758,516 - -0.7 758,555 - -0.6 758,599 + +0.2 758,600 - -0.4 758,640 + -1.2 758,640 + -0.5 758,640 + -0.2 758,641 - +0.4 758,641 - +0.2 758,641 - -0.6 758,644 + +0.8 758,645 - +1.2 758,645 - -2.2 758,645 - +1.9 758,668 + +0.2 758,697 + +0.2 758,726 + +0.1 758,727 - +0.2 758,727 - +0.2 758,757 + -0.2 758,770 + +2.0 758,822 - +1.3 759,081 + RR42_RS24215 0.59 +0.8 759,234 - RR42_RS24215 0.89 +0.4 759,234 - RR42_RS24215 0.89 +0.5 759,309 + +0.8 759,310 - +0.0 759,341 - +0.8 759,366 + +0.2 759,367 - +0.3 759,424 + -0.1 759,424 + -0.6 759,424 + +0.1 759,424 + -0.2 759,425 - +1.0 759,425 - -0.3 759,425 - -0.4 759,548 + -0.5 759,548 + +0.0 759,548 + +0.1 759,548 + -0.4 759,548 + -0.8 759,549 - -0.3 759,549 - +0.5 759,549 - -0.7 759,549 - +0.3 759,549 - +0.9 759,720 + -0.0 759,721 - -1.2 759,721 - +0.5 759,721 - +0.8 759,750 + +0.3 759,840 + +0.2 759,868 + +0.1 759,868 + -0.3 759,868 + -1.1 759,868 + -0.4 759,869 - +0.8 759,869 - -0.1 759,869 - +0.1 759,915 + +0.5 759,997 + -0.7 759,998 - -0.6 759,998 - -0.5 760,008 - +0.3 760,008 - +0.4 760,008 - +0.4 760,038 + -0.2 760,038 + +0.3 760,106 - RR42_RS24220 0.11 -0.0 760,143 - RR42_RS24220 0.15 -0.2 760,185 + RR42_RS24220 0.20 -0.6 760,217 - RR42_RS24220 0.23 +0.8 760,278 - RR42_RS24220 0.29 +0.1 760,287 + RR42_RS24220 0.30 +0.4
Or see this region's nucleotide sequence