Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23630 and RR42_RS23635 are separated by 293 nucleotides RR42_RS23635 and RR42_RS23640 are separated by 1 nucleotides RR42_RS23640 and RR42_RS23645 are separated by 50 nucleotides
RR42_RS23630: RR42_RS23630 - hypothetical protein, at 627,967 to 628,956
_RS23630
RR42_RS23635: RR42_RS23635 - flagellar assembly protein FliT, at 629,250 to 629,585
_RS23635
RR42_RS23640: RR42_RS23640 - flagellar biosynthesis protein FliS, at 629,587 to 630,033
_RS23640
RR42_RS23645: RR42_RS23645 - flagellar hook protein, at 630,084 to 631,514
_RS23645
Position (kb) 629
630
631 Strain fitness (log2 ratio) -1
0
1
2 at 628.706 kb on + strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.721 kb on - strand, within RR42_RS23630 at 628.845 kb on - strand, within RR42_RS23630 at 629.022 kb on + strand at 629.023 kb on - strand at 629.212 kb on + strand at 629.212 kb on + strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.266 kb on + strand at 629.267 kb on - strand at 629.464 kb on + strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.538 kb on + strand, within RR42_RS23635 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640 at 630.005 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.030 kb on - strand at 630.127 kb on + strand at 630.127 kb on + strand at 630.188 kb on - strand at 630.229 kb on + strand, within RR42_RS23645 at 630.279 kb on - strand, within RR42_RS23645 at 630.634 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.959 kb on - strand, within RR42_RS23645
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 628,706 + RR42_RS23630 0.75 -0.8 628,707 - RR42_RS23630 0.75 -1.5 628,707 - RR42_RS23630 0.75 +0.1 628,707 - RR42_RS23630 0.75 -0.1 628,721 - RR42_RS23630 0.76 -0.3 628,845 - RR42_RS23630 0.89 -0.1 629,022 + -0.4 629,023 - +0.6 629,212 + +1.0 629,212 + +0.4 629,213 - -0.7 629,213 - +1.2 629,213 - -0.7 629,213 - +0.1 629,266 + -0.1 629,267 - -0.0 629,464 + RR42_RS23635 0.64 +0.4 629,465 - RR42_RS23635 0.64 -1.3 629,465 - RR42_RS23635 0.64 -0.1 629,538 + RR42_RS23635 0.86 -0.4 629,762 + RR42_RS23640 0.39 +0.7 629,762 + RR42_RS23640 0.39 +0.5 629,762 + RR42_RS23640 0.39 +0.0 629,762 + RR42_RS23640 0.39 +2.0 629,763 - RR42_RS23640 0.39 +1.9 629,763 - RR42_RS23640 0.39 -0.1 630,005 + +0.6 630,029 + +0.7 630,029 + -0.5 630,029 + +0.7 630,030 - -0.0 630,127 + +0.2 630,127 + -1.4 630,188 - +0.4 630,229 + RR42_RS23645 0.10 +0.2 630,279 - RR42_RS23645 0.14 +0.5 630,634 + RR42_RS23645 0.38 -0.3 630,850 + RR42_RS23645 0.54 +0.2 630,850 + RR42_RS23645 0.54 -0.0 630,851 - RR42_RS23645 0.54 +0.9 630,851 - RR42_RS23645 0.54 -0.5 630,851 - RR42_RS23645 0.54 -0.3 630,851 - RR42_RS23645 0.54 -0.6 630,851 - RR42_RS23645 0.54 +0.0 630,851 - RR42_RS23645 0.54 +0.9 630,959 - RR42_RS23645 0.61 -0.0
Or see this region's nucleotide sequence