Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23220

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23215 and RR42_RS23220 are separated by 129 nucleotidesRR42_RS23220 and RR42_RS23225 are separated by 222 nucleotidesRR42_RS23225 and RR42_RS23230 are separated by 215 nucleotides RR42_RS23215: RR42_RS23215 - DSBA oxidoreductase, at 540,303 to 541,841 _RS23215 RR42_RS23220: RR42_RS23220 - MarR family transcriptional regulator, at 541,971 to 542,414 _RS23220 RR42_RS23225: RR42_RS23225 - hypothetical protein, at 542,637 to 542,948 _RS23225 RR42_RS23230: RR42_RS23230 - glycerate kinase, at 543,164 to 544,354 _RS23230 Position (kb) 541 542 543Strain fitness (log2 ratio) -2 -1 0 1 2at 540.976 kb on + strand, within RR42_RS23215at 540.976 kb on + strand, within RR42_RS23215at 540.977 kb on - strand, within RR42_RS23215at 541.001 kb on + strand, within RR42_RS23215at 541.001 kb on + strand, within RR42_RS23215at 541.207 kb on - strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.336 kb on + strand, within RR42_RS23215at 541.337 kb on - strand, within RR42_RS23215at 541.337 kb on - strand, within RR42_RS23215at 541.341 kb on - strand, within RR42_RS23215at 541.341 kb on - strand, within RR42_RS23215at 541.443 kb on - strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.657 kb on + strand, within RR42_RS23215at 541.658 kb on - strand, within RR42_RS23215at 541.658 kb on - strand, within RR42_RS23215at 541.876 kb on + strandat 541.959 kb on + strandat 542.101 kb on - strand, within RR42_RS23220at 542.112 kb on + strand, within RR42_RS23220at 542.113 kb on - strand, within RR42_RS23220at 542.113 kb on - strand, within RR42_RS23220at 542.704 kb on + strand, within RR42_RS23225at 542.704 kb on + strand, within RR42_RS23225at 542.704 kb on + strand, within RR42_RS23225at 542.705 kb on - strand, within RR42_RS23225at 542.705 kb on - strand, within RR42_RS23225at 542.705 kb on - strand, within RR42_RS23225at 542.705 kb on - strand, within RR42_RS23225at 542.705 kb on - strand, within RR42_RS23225at 542.713 kb on + strand, within RR42_RS23225at 542.763 kb on - strand, within RR42_RS23225at 543.022 kb on + strandat 543.037 kb on + strandat 543.038 kb on - strandat 543.089 kb on + strandat 543.097 kb on + strandat 543.097 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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540,976 + RR42_RS23215 0.44 +0.4
540,976 + RR42_RS23215 0.44 +0.1
540,977 - RR42_RS23215 0.44 +0.3
541,001 + RR42_RS23215 0.45 +0.3
541,001 + RR42_RS23215 0.45 +1.0
541,207 - RR42_RS23215 0.59 +0.7
541,336 + RR42_RS23215 0.67 -1.5
541,336 + RR42_RS23215 0.67 -0.0
541,336 + RR42_RS23215 0.67 -1.4
541,336 + RR42_RS23215 0.67 +0.5
541,336 + RR42_RS23215 0.67 -0.3
541,336 + RR42_RS23215 0.67 -0.0
541,336 + RR42_RS23215 0.67 -0.4
541,337 - RR42_RS23215 0.67 +0.2
541,337 - RR42_RS23215 0.67 -0.4
541,341 - RR42_RS23215 0.67 +0.6
541,341 - RR42_RS23215 0.67 +1.6
541,443 - RR42_RS23215 0.74 +0.2
541,657 + RR42_RS23215 0.88 -1.8
541,657 + RR42_RS23215 0.88 -0.2
541,657 + RR42_RS23215 0.88 +0.6
541,657 + RR42_RS23215 0.88 +0.3
541,657 + RR42_RS23215 0.88 -0.5
541,657 + RR42_RS23215 0.88 +0.2
541,658 - RR42_RS23215 0.88 -0.7
541,658 - RR42_RS23215 0.88 +0.8
541,876 + +0.2
541,959 + -0.3
542,101 - RR42_RS23220 0.29 +1.2
542,112 + RR42_RS23220 0.32 +0.4
542,113 - RR42_RS23220 0.32 +2.0
542,113 - RR42_RS23220 0.32 -0.1
542,704 + RR42_RS23225 0.21 -0.0
542,704 + RR42_RS23225 0.21 -1.6
542,704 + RR42_RS23225 0.21 +0.1
542,705 - RR42_RS23225 0.22 -0.4
542,705 - RR42_RS23225 0.22 +0.3
542,705 - RR42_RS23225 0.22 +0.3
542,705 - RR42_RS23225 0.22 +0.3
542,705 - RR42_RS23225 0.22 -0.1
542,713 + RR42_RS23225 0.24 +0.9
542,763 - RR42_RS23225 0.40 +1.0
543,022 + -0.8
543,037 + -0.3
543,038 - -0.4
543,089 + +0.3
543,097 + -1.4
543,097 + +0.2

Or see this region's nucleotide sequence