Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21185 and RR42_RS21190 are separated by 58 nucleotides RR42_RS21190 and RR42_RS21195 are separated by 67 nucleotides RR42_RS21195 and RR42_RS21200 are separated by 52 nucleotides
RR42_RS21185: RR42_RS21185 - AMP nucleosidase, at 77,087 to 78,583
_RS21185
RR42_RS21190: RR42_RS21190 - LysR family transcriptional regulator, at 78,642 to 79,085
_RS21190
RR42_RS21195: RR42_RS21195 - phosphohydrolase, at 79,153 to 79,848
_RS21195
RR42_RS21200: RR42_RS21200 - membrane protein, at 79,901 to 80,545
_RS21200
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.296 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.459 kb on - strand at 78.481 kb on + strand at 78.481 kb on + strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.582 kb on - strand at 78.734 kb on + strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.823 kb on + strand, within RR42_RS21190 at 78.824 kb on - strand, within RR42_RS21190 at 78.971 kb on - strand, within RR42_RS21190 at 79.096 kb on + strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.106 kb on - strand at 79.159 kb on - strand at 79.310 kb on + strand, within RR42_RS21195 at 79.364 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195 at 79.724 kb on + strand, within RR42_RS21195 at 79.724 kb on + strand, within RR42_RS21195 at 79.795 kb on + strand at 79.796 kb on - strand at 79.796 kb on - strand at 79.890 kb on - strand at 79.890 kb on - strand at 80.043 kb on + strand, within RR42_RS21200 at 80.044 kb on - strand, within RR42_RS21200 at 80.084 kb on - strand, within RR42_RS21200 at 80.154 kb on + strand, within RR42_RS21200 at 80.154 kb on + strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.155 kb on - strand, within RR42_RS21200 at 80.188 kb on - strand, within RR42_RS21200 at 80.247 kb on + strand, within RR42_RS21200 at 80.311 kb on - strand, within RR42_RS21200 at 80.410 kb on - strand, within RR42_RS21200 at 80.529 kb on + strand at 80.530 kb on - strand at 80.530 kb on - strand at 80.727 kb on - strand at 80.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 78,296 + RR42_RS21185 0.81 +0.2 78,396 + RR42_RS21185 0.87 -0.3 78,396 + RR42_RS21185 0.87 -0.4 78,396 + RR42_RS21185 0.87 -0.5 78,396 + RR42_RS21185 0.87 +0.2 78,397 - RR42_RS21185 0.88 -1.8 78,397 - RR42_RS21185 0.88 -0.5 78,459 - -1.0 78,481 + -0.6 78,481 + -0.2 78,482 - +0.5 78,482 - +0.2 78,482 - -0.2 78,482 - -0.3 78,482 - -0.9 78,582 - -0.8 78,734 + RR42_RS21190 0.21 -2.0 78,735 - RR42_RS21190 0.21 -0.6 78,735 - RR42_RS21190 0.21 +0.0 78,735 - RR42_RS21190 0.21 +0.1 78,784 + RR42_RS21190 0.32 +0.6 78,784 + RR42_RS21190 0.32 -0.1 78,785 - RR42_RS21190 0.32 -1.0 78,785 - RR42_RS21190 0.32 -0.7 78,823 + RR42_RS21190 0.41 -0.8 78,824 - RR42_RS21190 0.41 +1.0 78,971 - RR42_RS21190 0.74 -1.0 79,096 + -2.1 79,097 - +0.9 79,097 - -0.1 79,097 - -0.1 79,097 - +0.9 79,106 - -1.2 79,159 - -1.0 79,310 + RR42_RS21195 0.23 -0.3 79,364 + RR42_RS21195 0.30 -0.3 79,439 + RR42_RS21195 0.41 -0.8 79,439 + RR42_RS21195 0.41 +0.2 79,439 + RR42_RS21195 0.41 -0.5 79,439 + RR42_RS21195 0.41 -0.3 79,439 + RR42_RS21195 0.41 -0.6 79,439 + RR42_RS21195 0.41 -0.1 79,440 - RR42_RS21195 0.41 +0.1 79,440 - RR42_RS21195 0.41 -0.1 79,724 + RR42_RS21195 0.82 +0.8 79,724 + RR42_RS21195 0.82 -1.8 79,795 + +1.1 79,796 - +1.0 79,796 - +0.2 79,890 - +0.1 79,890 - -0.3 80,043 + RR42_RS21200 0.22 -0.6 80,044 - RR42_RS21200 0.22 +0.4 80,084 - RR42_RS21200 0.28 -0.0 80,154 + RR42_RS21200 0.39 -1.8 80,154 + RR42_RS21200 0.39 -1.8 80,155 - RR42_RS21200 0.39 +0.4 80,155 - RR42_RS21200 0.39 +0.9 80,155 - RR42_RS21200 0.39 +0.2 80,188 - RR42_RS21200 0.44 -1.4 80,247 + RR42_RS21200 0.54 +1.2 80,311 - RR42_RS21200 0.64 +0.3 80,410 - RR42_RS21200 0.79 +0.0 80,529 + -0.5 80,530 - -0.7 80,530 - +0.7 80,727 - +0.4 80,742 + -0.7
Or see this region's nucleotide sequence