Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21125

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21120 and RR42_RS21125 are separated by 249 nucleotidesRR42_RS21125 and RR42_RS21130 are separated by 248 nucleotides RR42_RS21120: RR42_RS21120 - acetate kinase, at 63,333 to 64,745 _RS21120 RR42_RS21125: RR42_RS21125 - membrane protein, at 64,995 to 65,507 _RS21125 RR42_RS21130: RR42_RS21130 - ABC transporter permease, at 65,756 to 66,892 _RS21130 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.025 kb on - strand, within RR42_RS21120at 64.025 kb on - strand, within RR42_RS21120at 64.025 kb on - strand, within RR42_RS21120at 64.025 kb on - strand, within RR42_RS21120at 64.042 kb on - strand, within RR42_RS21120at 64.155 kb on + strand, within RR42_RS21120at 64.167 kb on + strand, within RR42_RS21120at 64.168 kb on - strand, within RR42_RS21120at 64.168 kb on - strand, within RR42_RS21120at 64.209 kb on + strand, within RR42_RS21120at 64.210 kb on - strand, within RR42_RS21120at 64.210 kb on - strand, within RR42_RS21120at 64.347 kb on - strand, within RR42_RS21120at 64.395 kb on + strand, within RR42_RS21120at 64.395 kb on + strand, within RR42_RS21120at 64.395 kb on + strand, within RR42_RS21120at 64.635 kb on + strandat 64.660 kb on - strandat 64.827 kb on - strandat 64.827 kb on - strandat 64.842 kb on + strandat 64.843 kb on - strandat 65.006 kb on + strandat 65.006 kb on + strandat 65.007 kb on - strandat 65.007 kb on - strandat 65.007 kb on - strandat 65.117 kb on + strand, within RR42_RS21125at 65.118 kb on - strand, within RR42_RS21125at 65.614 kb on - strandat 65.681 kb on + strandat 65.682 kb on - strandat 65.682 kb on - strandat 65.931 kb on - strand, within RR42_RS21130at 65.931 kb on - strand, within RR42_RS21130at 65.962 kb on - strand, within RR42_RS21130at 65.990 kb on + strand, within RR42_RS21130at 65.990 kb on + strand, within RR42_RS21130at 65.991 kb on - strand, within RR42_RS21130at 65.991 kb on - strand, within RR42_RS21130at 66.076 kb on - strand, within RR42_RS21130at 66.198 kb on + strand, within RR42_RS21130at 66.198 kb on + strand, within RR42_RS21130at 66.198 kb on + strand, within RR42_RS21130at 66.199 kb on - strand, within RR42_RS21130at 66.209 kb on + strand, within RR42_RS21130at 66.279 kb on - strand, within RR42_RS21130

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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64,025 - RR42_RS21120 0.49 +0.4
64,025 - RR42_RS21120 0.49 -0.2
64,025 - RR42_RS21120 0.49 -0.9
64,025 - RR42_RS21120 0.49 +0.2
64,042 - RR42_RS21120 0.50 +0.2
64,155 + RR42_RS21120 0.58 +0.7
64,167 + RR42_RS21120 0.59 +0.6
64,168 - RR42_RS21120 0.59 -0.8
64,168 - RR42_RS21120 0.59 +0.2
64,209 + RR42_RS21120 0.62 +0.4
64,210 - RR42_RS21120 0.62 +0.5
64,210 - RR42_RS21120 0.62 +0.6
64,347 - RR42_RS21120 0.72 +0.5
64,395 + RR42_RS21120 0.75 +0.1
64,395 + RR42_RS21120 0.75 -1.9
64,395 + RR42_RS21120 0.75 -0.1
64,635 + +0.5
64,660 - -1.1
64,827 - +0.1
64,827 - +1.1
64,842 + +0.2
64,843 - -0.1
65,006 + +1.2
65,006 + +1.2
65,007 - -0.2
65,007 - +0.3
65,007 - -0.2
65,117 + RR42_RS21125 0.24 +1.1
65,118 - RR42_RS21125 0.24 +0.2
65,614 - +0.3
65,681 + +1.7
65,682 - +0.2
65,682 - -1.2
65,931 - RR42_RS21130 0.15 +0.4
65,931 - RR42_RS21130 0.15 +0.1
65,962 - RR42_RS21130 0.18 +0.6
65,990 + RR42_RS21130 0.21 +0.2
65,990 + RR42_RS21130 0.21 -0.7
65,991 - RR42_RS21130 0.21 +0.6
65,991 - RR42_RS21130 0.21 -0.2
66,076 - RR42_RS21130 0.28 +1.2
66,198 + RR42_RS21130 0.39 -0.2
66,198 + RR42_RS21130 0.39 +0.0
66,198 + RR42_RS21130 0.39 +0.3
66,199 - RR42_RS21130 0.39 +0.2
66,209 + RR42_RS21130 0.40 +0.5
66,279 - RR42_RS21130 0.46 -0.6

Or see this region's nucleotide sequence