Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20905 and RR42_RS20910 are separated by 10 nucleotides RR42_RS20910 and RR42_RS20915 overlap by 1 nucleotides
RR42_RS20905: RR42_RS20905 - acyl-CoA dehydrogenase, at 12,512 to 13,711
_RS20905
RR42_RS20910: RR42_RS20910 - hypothetical protein, at 13,722 to 14,726
_RS20910
RR42_RS20915: RR42_RS20915 - hypothetical protein, at 14,726 to 15,718
_RS20915
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 13.675 kb on + strand at 13.709 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.793 kb on + strand at 13.794 kb on - strand at 13.794 kb on - strand at 13.794 kb on - strand at 13.803 kb on + strand at 13.803 kb on + strand at 13.804 kb on - strand at 13.805 kb on - strand at 14.025 kb on + strand, within RR42_RS20910 at 14.251 kb on - strand, within RR42_RS20910 at 14.314 kb on - strand, within RR42_RS20910 at 14.314 kb on - strand, within RR42_RS20910 at 14.314 kb on - strand, within RR42_RS20910 at 14.550 kb on + strand, within RR42_RS20910 at 14.551 kb on - strand, within RR42_RS20910 at 14.612 kb on + strand, within RR42_RS20910 at 14.724 kb on + strand at 14.725 kb on - strand at 14.816 kb on + strand at 14.816 kb on + strand at 14.816 kb on + strand at 14.820 kb on + strand at 14.820 kb on + strand at 14.821 kb on - strand at 14.984 kb on + strand, within RR42_RS20915 at 14.985 kb on - strand, within RR42_RS20915 at 15.036 kb on + strand, within RR42_RS20915 at 15.037 kb on - strand, within RR42_RS20915 at 15.060 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.174 kb on - strand, within RR42_RS20915 at 15.443 kb on + strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.611 kb on - strand, within RR42_RS20915 at 15.666 kb on - strand at 15.695 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 13,675 + +0.2 13,709 + -1.0 13,793 + -0.9 13,793 + +1.0 13,793 + -0.0 13,794 - -0.6 13,794 - -0.2 13,794 - -0.5 13,803 + -0.5 13,803 + +1.1 13,804 - +0.3 13,805 - +2.2 14,025 + RR42_RS20910 0.30 +0.7 14,251 - RR42_RS20910 0.53 +1.9 14,314 - RR42_RS20910 0.59 -0.3 14,314 - RR42_RS20910 0.59 +0.6 14,314 - RR42_RS20910 0.59 +0.8 14,550 + RR42_RS20910 0.82 +1.2 14,551 - RR42_RS20910 0.82 -0.7 14,612 + RR42_RS20910 0.89 -0.4 14,724 + +0.4 14,725 - +0.2 14,816 + +0.6 14,816 + -0.6 14,816 + +0.2 14,820 + +0.1 14,820 + -0.5 14,821 - +0.3 14,984 + RR42_RS20915 0.26 -0.4 14,985 - RR42_RS20915 0.26 +0.2 15,036 + RR42_RS20915 0.31 +0.7 15,037 - RR42_RS20915 0.31 -0.6 15,060 - RR42_RS20915 0.34 -0.4 15,101 - RR42_RS20915 0.38 -0.1 15,101 - RR42_RS20915 0.38 +0.3 15,174 - RR42_RS20915 0.45 -1.6 15,443 + RR42_RS20915 0.72 -0.0 15,452 - RR42_RS20915 0.73 -0.1 15,452 - RR42_RS20915 0.73 +0.0 15,497 + RR42_RS20915 0.78 +0.3 15,497 + RR42_RS20915 0.78 -0.2 15,611 - RR42_RS20915 0.89 -1.7 15,666 - +0.1 15,695 + -0.5
Or see this region's nucleotide sequence