Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19265

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19255 and RR42_RS19260 are separated by 236 nucleotidesRR42_RS19260 and RR42_RS19265 are separated by 1 nucleotidesRR42_RS19265 and RR42_RS19270 are separated by 71 nucleotidesRR42_RS19270 and RR42_RS19275 are separated by 112 nucleotides RR42_RS19255: RR42_RS19255 - 50S ribosomal protein L3, at 4,157,521 to 4,158,171 _RS19255 RR42_RS19260: RR42_RS19260 - nitrilotriacetate monooxygenase, at 4,158,408 to 4,158,899 _RS19260 RR42_RS19265: RR42_RS19265 - alanine-phosphoribitol ligase, at 4,158,901 to 4,160,142 _RS19265 RR42_RS19270: RR42_RS19270 - short-chain dehydrogenase, at 4,160,214 to 4,161,002 _RS19270 RR42_RS19275: RR42_RS19275 - carboxymethylenebutenolidase, at 4,161,115 to 4,162,344 _RS19275 Position (kb) 4158 4159 4160 4161Strain fitness (log2 ratio) -1 0 1 2 3at 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.358 kb on + strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.359 kb on - strandat 4158.409 kb on + strandat 4158.565 kb on + strand, within RR42_RS19260at 4158.565 kb on + strand, within RR42_RS19260at 4158.566 kb on - strand, within RR42_RS19260at 4158.566 kb on - strand, within RR42_RS19260at 4159.118 kb on + strand, within RR42_RS19265at 4159.118 kb on + strand, within RR42_RS19265at 4159.119 kb on - strand, within RR42_RS19265at 4159.249 kb on + strand, within RR42_RS19265at 4159.250 kb on - strand, within RR42_RS19265at 4159.250 kb on - strand, within RR42_RS19265at 4159.402 kb on - strand, within RR42_RS19265at 4159.402 kb on - strand, within RR42_RS19265at 4159.402 kb on - strand, within RR42_RS19265at 4159.402 kb on - strand, within RR42_RS19265at 4159.444 kb on - strand, within RR42_RS19265at 4159.541 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.613 kb on + strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.614 kb on - strand, within RR42_RS19265at 4159.924 kb on + strand, within RR42_RS19265at 4159.924 kb on + strand, within RR42_RS19265at 4159.924 kb on + strand, within RR42_RS19265at 4159.925 kb on - strand, within RR42_RS19265at 4159.925 kb on - strand, within RR42_RS19265at 4159.938 kb on + strand, within RR42_RS19265at 4159.938 kb on + strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4159.939 kb on - strand, within RR42_RS19265at 4160.066 kb on + strandat 4160.067 kb on - strandat 4160.067 kb on - strandat 4160.153 kb on + strandat 4160.153 kb on + strandat 4160.153 kb on + strandat 4160.154 kb on - strandat 4160.154 kb on - strandat 4160.154 kb on - strandat 4160.154 kb on - strandat 4160.156 kb on + strandat 4160.156 kb on + strandat 4160.156 kb on + strandat 4160.156 kb on + strandat 4160.156 kb on + strandat 4160.156 kb on + strandat 4160.157 kb on - strandat 4160.157 kb on - strandat 4160.157 kb on - strandat 4160.157 kb on - strandat 4160.157 kb on - strandat 4160.157 kb on - strandat 4160.159 kb on + strandat 4160.159 kb on + strandat 4160.159 kb on + strandat 4160.159 kb on + strandat 4160.159 kb on + strandat 4160.159 kb on + strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.160 kb on - strandat 4160.270 kb on - strandat 4160.287 kb on + strandat 4160.288 kb on - strandat 4160.288 kb on - strandat 4160.288 kb on - strandat 4160.288 kb on - strandat 4160.519 kb on + strand, within RR42_RS19270at 4160.520 kb on - strand, within RR42_RS19270at 4160.520 kb on - strand, within RR42_RS19270at 4160.551 kb on + strand, within RR42_RS19270at 4160.588 kb on + strand, within RR42_RS19270at 4160.588 kb on + strand, within RR42_RS19270at 4160.588 kb on + strand, within RR42_RS19270at 4160.588 kb on + strand, within RR42_RS19270at 4160.588 kb on + strand, within RR42_RS19270at 4160.589 kb on - strand, within RR42_RS19270at 4160.589 kb on - strand, within RR42_RS19270at 4160.589 kb on - strand, within RR42_RS19270at 4160.731 kb on + strand, within RR42_RS19270at 4160.731 kb on + strand, within RR42_RS19270at 4160.731 kb on + strand, within RR42_RS19270at 4160.731 kb on + strand, within RR42_RS19270at 4160.731 kb on + strand, within RR42_RS19270at 4160.732 kb on - strand, within RR42_RS19270at 4160.755 kb on + strand, within RR42_RS19270at 4160.755 kb on + strand, within RR42_RS19270at 4160.756 kb on - strand, within RR42_RS19270at 4160.756 kb on - strand, within RR42_RS19270at 4160.756 kb on - strand, within RR42_RS19270at 4160.828 kb on + strand, within RR42_RS19270at 4161.086 kb on + strandat 4161.086 kb on + strandat 4161.086 kb on + strandat 4161.087 kb on - strandat 4161.087 kb on - strandat 4161.087 kb on - strandat 4161.096 kb on + strandat 4161.096 kb on + strandat 4161.096 kb on + strandat 4161.097 kb on - strandat 4161.097 kb on - strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.116 kb on + strandat 4161.117 kb on - strandat 4161.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,158,358 + +0.3
4,158,358 + +0.5
4,158,358 + +0.4
4,158,359 - +0.7
4,158,359 - +0.1
4,158,359 - -0.4
4,158,359 - +0.6
4,158,409 + +0.5
4,158,565 + RR42_RS19260 0.32 +0.9
4,158,565 + RR42_RS19260 0.32 +0.6
4,158,566 - RR42_RS19260 0.32 +0.1
4,158,566 - RR42_RS19260 0.32 +0.3
4,159,118 + RR42_RS19265 0.17 +1.1
4,159,118 + RR42_RS19265 0.17 -0.4
4,159,119 - RR42_RS19265 0.18 +1.1
4,159,249 + RR42_RS19265 0.28 -0.1
4,159,250 - RR42_RS19265 0.28 +0.2
4,159,250 - RR42_RS19265 0.28 -0.5
4,159,402 - RR42_RS19265 0.40 +0.3
4,159,402 - RR42_RS19265 0.40 -0.9
4,159,402 - RR42_RS19265 0.40 +1.4
4,159,402 - RR42_RS19265 0.40 +0.0
4,159,444 - RR42_RS19265 0.44 +2.1
4,159,541 + RR42_RS19265 0.52 +0.5
4,159,613 + RR42_RS19265 0.57 -0.2
4,159,613 + RR42_RS19265 0.57 -0.1
4,159,613 + RR42_RS19265 0.57 +0.0
4,159,613 + RR42_RS19265 0.57 -0.4
4,159,613 + RR42_RS19265 0.57 -1.1
4,159,613 + RR42_RS19265 0.57 +0.3
4,159,613 + RR42_RS19265 0.57 +0.1
4,159,614 - RR42_RS19265 0.57 -0.4
4,159,614 - RR42_RS19265 0.57 -1.0
4,159,614 - RR42_RS19265 0.57 +0.7
4,159,614 - RR42_RS19265 0.57 +1.0
4,159,614 - RR42_RS19265 0.57 -0.0
4,159,614 - RR42_RS19265 0.57 +0.3
4,159,614 - RR42_RS19265 0.57 +0.1
4,159,924 + RR42_RS19265 0.82 +0.5
4,159,924 + RR42_RS19265 0.82 -0.1
4,159,924 + RR42_RS19265 0.82 -0.3
4,159,925 - RR42_RS19265 0.82 -0.8
4,159,925 - RR42_RS19265 0.82 +0.9
4,159,938 + RR42_RS19265 0.83 +0.6
4,159,938 + RR42_RS19265 0.83 -0.4
4,159,939 - RR42_RS19265 0.84 -0.2
4,159,939 - RR42_RS19265 0.84 +1.6
4,159,939 - RR42_RS19265 0.84 -0.3
4,159,939 - RR42_RS19265 0.84 +0.7
4,159,939 - RR42_RS19265 0.84 -0.6
4,159,939 - RR42_RS19265 0.84 +0.1
4,159,939 - RR42_RS19265 0.84 -0.0
4,159,939 - RR42_RS19265 0.84 -0.3
4,160,066 + -0.3
4,160,067 - +0.0
4,160,067 - +1.6
4,160,153 + +0.5
4,160,153 + +0.5
4,160,153 + +1.7
4,160,154 - -0.4
4,160,154 - -0.4
4,160,154 - -0.1
4,160,154 - +0.3
4,160,156 + -0.1
4,160,156 + -0.1
4,160,156 + +0.0
4,160,156 + +0.5
4,160,156 + -0.2
4,160,156 + +1.1
4,160,157 - +0.2
4,160,157 - +0.5
4,160,157 - +0.4
4,160,157 - -0.5
4,160,157 - +0.1
4,160,157 - +0.6
4,160,159 + +0.2
4,160,159 + -0.5
4,160,159 + +0.0
4,160,159 + +0.5
4,160,159 + +0.1
4,160,159 + +0.8
4,160,160 - +2.1
4,160,160 - +0.5
4,160,160 - -0.2
4,160,160 - -0.7
4,160,160 - +0.5
4,160,160 - -0.1
4,160,160 - -0.7
4,160,270 - +0.2
4,160,287 + +0.6
4,160,288 - -0.1
4,160,288 - -0.4
4,160,288 - -0.5
4,160,288 - -0.7
4,160,519 + RR42_RS19270 0.39 -0.9
4,160,520 - RR42_RS19270 0.39 -0.2
4,160,520 - RR42_RS19270 0.39 +3.7
4,160,551 + RR42_RS19270 0.43 +1.0
4,160,588 + RR42_RS19270 0.47 -0.7
4,160,588 + RR42_RS19270 0.47 +1.1
4,160,588 + RR42_RS19270 0.47 -1.1
4,160,588 + RR42_RS19270 0.47 -0.5
4,160,588 + RR42_RS19270 0.47 +0.1
4,160,589 - RR42_RS19270 0.48 +2.7
4,160,589 - RR42_RS19270 0.48 -0.4
4,160,589 - RR42_RS19270 0.48 +0.4
4,160,731 + RR42_RS19270 0.66 -1.0
4,160,731 + RR42_RS19270 0.66 -0.7
4,160,731 + RR42_RS19270 0.66 -1.6
4,160,731 + RR42_RS19270 0.66 -0.4
4,160,731 + RR42_RS19270 0.66 +0.6
4,160,732 - RR42_RS19270 0.66 +0.3
4,160,755 + RR42_RS19270 0.69 +0.6
4,160,755 + RR42_RS19270 0.69 -0.4
4,160,756 - RR42_RS19270 0.69 +0.2
4,160,756 - RR42_RS19270 0.69 -1.5
4,160,756 - RR42_RS19270 0.69 -0.4
4,160,828 + RR42_RS19270 0.78 +0.4
4,161,086 + -1.1
4,161,086 + +0.7
4,161,086 + +1.1
4,161,087 - +0.5
4,161,087 - +0.1
4,161,087 - -0.9
4,161,096 + +0.9
4,161,096 + -1.0
4,161,096 + +0.5
4,161,097 - -0.8
4,161,097 - -0.2
4,161,116 + +0.6
4,161,116 + +1.0
4,161,116 + -1.7
4,161,116 + +0.2
4,161,116 + +0.6
4,161,116 + -0.4
4,161,116 + +1.1
4,161,117 - +0.1
4,161,117 - +1.5

Or see this region's nucleotide sequence