Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03600 and RR42_RS03605 are separated by 36 nucleotides RR42_RS03605 and RR42_RS03610 are separated by 40 nucleotides
RR42_RS03600: RR42_RS03600 - alpha/beta hydrolase, at 803,820 to 804,791
_RS03600
RR42_RS03605: RR42_RS03605 - glutathionyl-hydroquinone reductase YqjG, at 804,828 to 805,811
_RS03605
RR42_RS03610: RR42_RS03610 - alpha/beta hydrolase, at 805,852 to 806,886
_RS03610
Position (kb) 804
805
806 Strain fitness (log2 ratio) -1
0
1
2 at 803.838 kb on - strand at 803.848 kb on - strand at 803.976 kb on + strand, within RR42_RS03600 at 804.027 kb on + strand, within RR42_RS03600 at 804.044 kb on + strand, within RR42_RS03600 at 804.044 kb on + strand, within RR42_RS03600 at 804.045 kb on - strand, within RR42_RS03600 at 804.129 kb on - strand, within RR42_RS03600 at 804.142 kb on - strand, within RR42_RS03600 at 804.224 kb on + strand, within RR42_RS03600 at 804.495 kb on + strand, within RR42_RS03600 at 804.495 kb on + strand, within RR42_RS03600 at 804.495 kb on + strand, within RR42_RS03600 at 804.495 kb on + strand, within RR42_RS03600 at 804.496 kb on - strand, within RR42_RS03600 at 804.800 kb on - strand at 804.867 kb on + strand at 804.867 kb on + strand at 804.867 kb on + strand at 804.868 kb on - strand at 805.000 kb on - strand, within RR42_RS03605 at 805.182 kb on + strand, within RR42_RS03605 at 805.183 kb on - strand, within RR42_RS03605 at 805.332 kb on + strand, within RR42_RS03605 at 805.582 kb on - strand, within RR42_RS03605 at 805.582 kb on - strand, within RR42_RS03605 at 805.698 kb on - strand, within RR42_RS03605 at 805.710 kb on + strand, within RR42_RS03605 at 805.711 kb on - strand, within RR42_RS03605 at 805.730 kb on + strand at 805.730 kb on + strand at 805.730 kb on + strand at 805.948 kb on + strand at 805.948 kb on + strand at 805.949 kb on - strand at 806.035 kb on + strand, within RR42_RS03610 at 806.035 kb on + strand, within RR42_RS03610 at 806.036 kb on - strand, within RR42_RS03610 at 806.212 kb on + strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.488 kb on + strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.595 kb on - strand, within RR42_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 803,838 - +1.4 803,848 - -0.4 803,976 + RR42_RS03600 0.16 +1.1 804,027 + RR42_RS03600 0.21 +0.4 804,044 + RR42_RS03600 0.23 -1.2 804,044 + RR42_RS03600 0.23 +0.3 804,045 - RR42_RS03600 0.23 +0.2 804,129 - RR42_RS03600 0.32 +0.0 804,142 - RR42_RS03600 0.33 +0.4 804,224 + RR42_RS03600 0.42 +0.0 804,495 + RR42_RS03600 0.69 -0.6 804,495 + RR42_RS03600 0.69 -0.6 804,495 + RR42_RS03600 0.69 +0.5 804,495 + RR42_RS03600 0.69 +0.3 804,496 - RR42_RS03600 0.70 +1.6 804,800 - +0.0 804,867 + -0.1 804,867 + +0.1 804,867 + +1.3 804,868 - +1.2 805,000 - RR42_RS03605 0.17 +0.1 805,182 + RR42_RS03605 0.36 +1.1 805,183 - RR42_RS03605 0.36 +1.0 805,332 + RR42_RS03605 0.51 +2.0 805,582 - RR42_RS03605 0.77 +0.3 805,582 - RR42_RS03605 0.77 -0.0 805,698 - RR42_RS03605 0.88 +0.8 805,710 + RR42_RS03605 0.90 +0.5 805,711 - RR42_RS03605 0.90 +0.2 805,730 + +1.1 805,730 + -0.6 805,730 + +1.6 805,948 + -0.6 805,948 + +0.2 805,949 - +0.7 806,035 + RR42_RS03610 0.18 -1.4 806,035 + RR42_RS03610 0.18 -0.7 806,036 - RR42_RS03610 0.18 -0.7 806,212 + RR42_RS03610 0.35 +0.1 806,429 - RR42_RS03610 0.56 +0.3 806,429 - RR42_RS03610 0.56 -1.3 806,429 - RR42_RS03610 0.56 -0.3 806,485 + RR42_RS03610 0.61 -0.2 806,485 + RR42_RS03610 0.61 -0.6 806,485 + RR42_RS03610 0.61 +0.6 806,485 + RR42_RS03610 0.61 +0.1 806,485 + RR42_RS03610 0.61 -0.6 806,485 + RR42_RS03610 0.61 -0.3 806,486 - RR42_RS03610 0.61 -0.5 806,486 - RR42_RS03610 0.61 +0.5 806,486 - RR42_RS03610 0.61 -0.3 806,486 - RR42_RS03610 0.61 +0.2 806,486 - RR42_RS03610 0.61 +0.2 806,488 + RR42_RS03610 0.61 +0.2 806,489 - RR42_RS03610 0.62 +0.2 806,489 - RR42_RS03610 0.62 -1.0 806,489 - RR42_RS03610 0.62 -0.4 806,489 - RR42_RS03610 0.62 +0.3 806,489 - RR42_RS03610 0.62 -0.4 806,489 - RR42_RS03610 0.62 -0.8 806,593 + RR42_RS03610 0.72 +0.6 806,593 + RR42_RS03610 0.72 -0.0 806,594 - RR42_RS03610 0.72 +1.0 806,594 - RR42_RS03610 0.72 +1.0 806,595 - RR42_RS03610 0.72 -0.6
Or see this region's nucleotide sequence