Experiment: PYE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01899 and CCNA_01900 overlap by 4 nucleotides CCNA_01900 and CCNA_01901 are separated by 107 nucleotides
CCNA_01899: CCNA_01899 - DNA polymerase III, delta, at 2,041,635 to 2,042,645
_01899
CCNA_01900: CCNA_01900 - thymidylate kinase, at 2,042,642 to 2,043,268
_01900
CCNA_01901: CCNA_01901 - lipoprotein, at 2,043,376 to 2,044,365
_01901
Position (kb)
2042
2043
2044 Strain fitness (log2 ratio)
-2
-1
0
1 at 2041.653 kb on - strand at 2041.678 kb on + strand at 2041.678 kb on + strand at 2043.390 kb on - strand at 2043.396 kb on + strand at 2043.406 kb on + strand at 2043.433 kb on + strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.434 kb on - strand at 2043.515 kb on - strand, within CCNA_01901 at 2043.588 kb on + strand, within CCNA_01901 at 2043.591 kb on - strand, within CCNA_01901 at 2043.619 kb on - strand, within CCNA_01901 at 2043.644 kb on + strand, within CCNA_01901 at 2043.670 kb on + strand, within CCNA_01901 at 2043.670 kb on + strand, within CCNA_01901 at 2043.678 kb on - strand, within CCNA_01901 at 2043.708 kb on - strand, within CCNA_01901 at 2043.732 kb on + strand, within CCNA_01901 at 2043.732 kb on + strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.760 kb on - strand, within CCNA_01901 at 2043.866 kb on + strand, within CCNA_01901 at 2043.899 kb on + strand, within CCNA_01901 at 2043.899 kb on + strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.907 kb on - strand, within CCNA_01901 at 2043.938 kb on - strand, within CCNA_01901 at 2043.993 kb on + strand, within CCNA_01901 at 2044.006 kb on - strand, within CCNA_01901 at 2044.123 kb on - strand, within CCNA_01901 at 2044.173 kb on + strand, within CCNA_01901 at 2044.206 kb on + strand, within CCNA_01901
Per-strain Table
Position Strand Gene LocusTag Fraction PYE remove 2,041,653 - -0.1 2,041,678 + -0.7 2,041,678 + -0.3 2,043,390 - -1.0 2,043,396 + -1.6 2,043,406 + -1.6 2,043,433 + -2.1 2,043,434 - +0.4 2,043,434 - -0.5 2,043,434 - +0.7 2,043,515 - CCNA_01901 0.14 -0.8 2,043,588 + CCNA_01901 0.21 -1.7 2,043,591 - CCNA_01901 0.22 -0.6 2,043,619 - CCNA_01901 0.25 -1.5 2,043,644 + CCNA_01901 0.27 -0.1 2,043,670 + CCNA_01901 0.30 -0.0 2,043,670 + CCNA_01901 0.30 -2.0 2,043,678 - CCNA_01901 0.31 -1.9 2,043,708 - CCNA_01901 0.34 -0.1 2,043,732 + CCNA_01901 0.36 -0.8 2,043,732 + CCNA_01901 0.36 +0.3 2,043,760 - CCNA_01901 0.39 -1.1 2,043,760 - CCNA_01901 0.39 -0.4 2,043,760 - CCNA_01901 0.39 -1.6 2,043,760 - CCNA_01901 0.39 +0.1 2,043,866 + CCNA_01901 0.49 -0.2 2,043,899 + CCNA_01901 0.53 -2.2 2,043,899 + CCNA_01901 0.53 -1.6 2,043,907 - CCNA_01901 0.54 +0.1 2,043,907 - CCNA_01901 0.54 -1.8 2,043,907 - CCNA_01901 0.54 +0.8 2,043,907 - CCNA_01901 0.54 -0.9 2,043,907 - CCNA_01901 0.54 +0.7 2,043,907 - CCNA_01901 0.54 -1.7 2,043,938 - CCNA_01901 0.57 +0.1 2,043,993 + CCNA_01901 0.62 -0.3 2,044,006 - CCNA_01901 0.64 -1.9 2,044,123 - CCNA_01901 0.75 -0.7 2,044,173 + CCNA_01901 0.81 -1.4 2,044,206 + CCNA_01901 0.84 -1.7
Or see this region's nucleotide sequence