Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00394

Experiment: PYE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00393 and CCNA_00394 overlap by 4 nucleotidesCCNA_00394 and CCNA_00395 are separated by 152 nucleotides CCNA_00393: CCNA_00393 - RNA polymerase sigma factor, at 409,326 to 410,552 _00393 CCNA_00394: CCNA_00394 - YCII-related domain protein, at 410,549 to 410,899 _00394 CCNA_00395: CCNA_00395 - feruloyl-CoA synthetase, at 411,052 to 412,842 _00395 Position (kb) 410 411Strain fitness (log2 ratio) -2 -1 0 1 2at 409.577 kb on - strand, within CCNA_00393at 409.585 kb on + strand, within CCNA_00393at 409.593 kb on - strand, within CCNA_00393at 409.593 kb on - strand, within CCNA_00393at 409.599 kb on - strand, within CCNA_00393at 409.639 kb on - strand, within CCNA_00393at 409.640 kb on - strand, within CCNA_00393at 409.641 kb on - strand, within CCNA_00393at 409.662 kb on - strand, within CCNA_00393at 409.667 kb on + strand, within CCNA_00393at 409.680 kb on + strand, within CCNA_00393at 409.688 kb on - strand, within CCNA_00393at 409.690 kb on + strand, within CCNA_00393at 409.706 kb on + strand, within CCNA_00393at 409.706 kb on + strand, within CCNA_00393at 409.706 kb on + strand, within CCNA_00393at 409.706 kb on + strand, within CCNA_00393at 409.714 kb on - strand, within CCNA_00393at 409.714 kb on - strand, within CCNA_00393at 409.714 kb on - strand, within CCNA_00393at 409.716 kb on + strand, within CCNA_00393at 409.770 kb on + strand, within CCNA_00393at 409.852 kb on - strand, within CCNA_00393at 409.867 kb on + strand, within CCNA_00393at 409.872 kb on + strand, within CCNA_00393at 409.872 kb on + strand, within CCNA_00393at 409.879 kb on + strand, within CCNA_00393at 409.880 kb on - strand, within CCNA_00393at 409.880 kb on - strand, within CCNA_00393at 409.894 kb on + strand, within CCNA_00393at 409.902 kb on - strand, within CCNA_00393at 409.917 kb on + strand, within CCNA_00393at 409.917 kb on + strand, within CCNA_00393at 409.923 kb on - strand, within CCNA_00393at 409.985 kb on + strand, within CCNA_00393at 410.005 kb on + strand, within CCNA_00393at 410.017 kb on + strand, within CCNA_00393at 410.035 kb on - strand, within CCNA_00393at 410.040 kb on - strand, within CCNA_00393at 410.045 kb on - strand, within CCNA_00393at 410.097 kb on + strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.105 kb on - strand, within CCNA_00393at 410.180 kb on + strand, within CCNA_00393at 410.181 kb on + strand, within CCNA_00393at 410.189 kb on - strand, within CCNA_00393at 410.189 kb on - strand, within CCNA_00393at 410.226 kb on + strand, within CCNA_00393at 410.274 kb on + strand, within CCNA_00393at 410.277 kb on + strand, within CCNA_00393at 410.278 kb on + strand, within CCNA_00393at 410.279 kb on + strand, within CCNA_00393at 410.283 kb on + strand, within CCNA_00393at 410.285 kb on + strand, within CCNA_00393at 410.290 kb on + strand, within CCNA_00393at 410.298 kb on - strand, within CCNA_00393at 410.323 kb on + strand, within CCNA_00393at 410.369 kb on + strand, within CCNA_00393at 410.427 kb on - strand, within CCNA_00393at 410.445 kb on + strandat 410.452 kb on + strandat 410.460 kb on - strandat 410.460 kb on - strandat 410.471 kb on + strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.479 kb on - strandat 410.546 kb on + strandat 410.555 kb on - strandat 410.555 kb on - strandat 410.573 kb on + strandat 410.581 kb on - strandat 410.581 kb on - strandat 410.600 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.618 kb on + strand, within CCNA_00394at 410.623 kb on + strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.626 kb on - strand, within CCNA_00394at 410.653 kb on + strand, within CCNA_00394at 410.653 kb on + strand, within CCNA_00394at 410.669 kb on + strand, within CCNA_00394at 410.678 kb on + strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.693 kb on - strand, within CCNA_00394at 410.696 kb on + strand, within CCNA_00394at 410.704 kb on + strand, within CCNA_00394at 410.726 kb on + strand, within CCNA_00394at 410.731 kb on + strand, within CCNA_00394at 410.753 kb on + strand, within CCNA_00394at 410.753 kb on + strand, within CCNA_00394at 410.759 kb on + strand, within CCNA_00394at 410.761 kb on - strand, within CCNA_00394at 410.761 kb on - strand, within CCNA_00394at 410.767 kb on - strand, within CCNA_00394at 410.783 kb on + strand, within CCNA_00394at 410.851 kb on + strand, within CCNA_00394at 410.901 kb on + strandat 410.903 kb on + strandat 410.948 kb on - strandat 411.023 kb on - strandat 411.025 kb on + strandat 411.025 kb on + strandat 411.033 kb on - strandat 411.035 kb on - strandat 411.057 kb on - strandat 411.064 kb on + strandat 411.072 kb on - strandat 411.084 kb on - strandat 411.089 kb on - strandat 411.137 kb on + strandat 411.144 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.145 kb on - strandat 411.155 kb on - strandat 411.155 kb on - strandat 411.162 kb on - strandat 411.164 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.180 kb on + strandat 411.206 kb on + strandat 411.217 kb on + strandat 411.272 kb on + strand, within CCNA_00395at 411.272 kb on + strand, within CCNA_00395at 411.294 kb on + strand, within CCNA_00395at 411.294 kb on + strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.331 kb on - strand, within CCNA_00395at 411.340 kb on + strand, within CCNA_00395at 411.341 kb on - strand, within CCNA_00395at 411.436 kb on + strand, within CCNA_00395at 411.445 kb on + strand, within CCNA_00395at 411.447 kb on + strand, within CCNA_00395at 411.458 kb on - strand, within CCNA_00395at 411.468 kb on - strand, within CCNA_00395at 411.555 kb on + strand, within CCNA_00395at 411.646 kb on + strand, within CCNA_00395at 411.655 kb on + strand, within CCNA_00395at 411.657 kb on + strand, within CCNA_00395at 411.665 kb on - strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.717 kb on + strand, within CCNA_00395at 411.725 kb on - strand, within CCNA_00395at 411.725 kb on - strand, within CCNA_00395at 411.751 kb on + strand, within CCNA_00395at 411.756 kb on + strand, within CCNA_00395at 411.773 kb on - strand, within CCNA_00395at 411.785 kb on + strand, within CCNA_00395at 411.793 kb on - strand, within CCNA_00395at 411.838 kb on + strand, within CCNA_00395at 411.843 kb on + strandat 411.846 kb on - strand, within CCNA_00395at 411.850 kb on + strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.858 kb on - strand, within CCNA_00395at 411.894 kb on - strand, within CCNA_00395

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE
remove
409,577 - CCNA_00393 0.20 +0.1
409,585 + CCNA_00393 0.21 -1.6
409,593 - CCNA_00393 0.22 +1.2
409,593 - CCNA_00393 0.22 +1.0
409,599 - CCNA_00393 0.22 +1.5
409,639 - CCNA_00393 0.26 +0.3
409,640 - CCNA_00393 0.26 +1.1
409,641 - CCNA_00393 0.26 -0.2
409,662 - CCNA_00393 0.27 -0.3
409,667 + CCNA_00393 0.28 -0.5
409,680 + CCNA_00393 0.29 -1.4
409,688 - CCNA_00393 0.30 -1.9
409,690 + CCNA_00393 0.30 +0.5
409,706 + CCNA_00393 0.31 -0.3
409,706 + CCNA_00393 0.31 +0.4
409,706 + CCNA_00393 0.31 +1.1
409,706 + CCNA_00393 0.31 -0.8
409,714 - CCNA_00393 0.32 +0.1
409,714 - CCNA_00393 0.32 -0.2
409,714 - CCNA_00393 0.32 -0.3
409,716 + CCNA_00393 0.32 +0.3
409,770 + CCNA_00393 0.36 -1.5
409,852 - CCNA_00393 0.43 -0.5
409,867 + CCNA_00393 0.44 -0.9
409,872 + CCNA_00393 0.44 -0.4
409,872 + CCNA_00393 0.44 -0.2
409,879 + CCNA_00393 0.45 -0.1
409,880 - CCNA_00393 0.45 +0.5
409,880 - CCNA_00393 0.45 -1.2
409,894 + CCNA_00393 0.46 -0.2
409,902 - CCNA_00393 0.47 +0.0
409,917 + CCNA_00393 0.48 -0.7
409,917 + CCNA_00393 0.48 -0.5
409,923 - CCNA_00393 0.49 +1.2
409,985 + CCNA_00393 0.54 -1.6
410,005 + CCNA_00393 0.55 -1.7
410,017 + CCNA_00393 0.56 -1.1
410,035 - CCNA_00393 0.58 +0.5
410,040 - CCNA_00393 0.58 +0.1
410,045 - CCNA_00393 0.59 +0.6
410,097 + CCNA_00393 0.63 -0.2
410,105 - CCNA_00393 0.63 -0.4
410,105 - CCNA_00393 0.63 -0.5
410,105 - CCNA_00393 0.63 +1.0
410,180 + CCNA_00393 0.70 +0.1
410,181 + CCNA_00393 0.70 -1.1
410,189 - CCNA_00393 0.70 -1.1
410,189 - CCNA_00393 0.70 -1.1
410,226 + CCNA_00393 0.73 -1.3
410,274 + CCNA_00393 0.77 -1.8
410,277 + CCNA_00393 0.78 +0.7
410,278 + CCNA_00393 0.78 -0.2
410,279 + CCNA_00393 0.78 +1.0
410,283 + CCNA_00393 0.78 -0.5
410,285 + CCNA_00393 0.78 -0.7
410,290 + CCNA_00393 0.79 -1.4
410,298 - CCNA_00393 0.79 -2.0
410,323 + CCNA_00393 0.81 -0.6
410,369 + CCNA_00393 0.85 -0.4
410,427 - CCNA_00393 0.90 +2.7
410,445 + -1.1
410,452 + +0.1
410,460 - -0.2
410,460 - -0.5
410,471 + -1.7
410,479 - +0.1
410,479 - +0.5
410,479 - -2.0
410,479 - -0.7
410,479 - +0.9
410,479 - -0.3
410,546 + -0.7
410,555 - -0.8
410,555 - -0.4
410,573 + +0.1
410,581 - +0.5
410,581 - +0.5
410,600 + CCNA_00394 0.15 -1.3
410,618 + CCNA_00394 0.20 -1.7
410,618 + CCNA_00394 0.20 -1.5
410,618 + CCNA_00394 0.20 -0.9
410,618 + CCNA_00394 0.20 -1.3
410,618 + CCNA_00394 0.20 -0.9
410,623 + CCNA_00394 0.21 +1.2
410,626 - CCNA_00394 0.22 -0.5
410,626 - CCNA_00394 0.22 -0.1
410,626 - CCNA_00394 0.22 +0.4
410,626 - CCNA_00394 0.22 +0.1
410,626 - CCNA_00394 0.22 +0.0
410,653 + CCNA_00394 0.30 -1.7
410,653 + CCNA_00394 0.30 +0.1
410,669 + CCNA_00394 0.34 -0.1
410,678 + CCNA_00394 0.37 -0.7
410,693 - CCNA_00394 0.41 -0.7
410,693 - CCNA_00394 0.41 -0.5
410,693 - CCNA_00394 0.41 -0.6
410,696 + CCNA_00394 0.42 -1.5
410,704 + CCNA_00394 0.44 -0.9
410,726 + CCNA_00394 0.50 -0.7
410,731 + CCNA_00394 0.52 +1.5
410,753 + CCNA_00394 0.58 -0.1
410,753 + CCNA_00394 0.58 -1.1
410,759 + CCNA_00394 0.60 -0.3
410,761 - CCNA_00394 0.60 +0.4
410,761 - CCNA_00394 0.60 +0.4
410,767 - CCNA_00394 0.62 -0.9
410,783 + CCNA_00394 0.67 -0.2
410,851 + CCNA_00394 0.86 -2.0
410,901 + -0.7
410,903 + +0.3
410,948 - -1.1
411,023 - -1.4
411,025 + -0.9
411,025 + -0.2
411,033 - +1.1
411,035 - -2.0
411,057 - +0.5
411,064 + -0.7
411,072 - +0.0
411,084 - -1.1
411,089 - +0.1
411,137 + +2.7
411,144 - +0.5
411,145 - -0.4
411,145 - +0.0
411,145 - -0.5
411,145 - -0.2
411,155 - -0.9
411,155 - -0.4
411,162 - -1.0
411,164 + +0.8
411,180 + +0.2
411,180 + -0.4
411,180 + +0.8
411,180 + -0.6
411,206 + +1.4
411,217 + +1.1
411,272 + CCNA_00395 0.12 -0.3
411,272 + CCNA_00395 0.12 +0.9
411,294 + CCNA_00395 0.14 -0.7
411,294 + CCNA_00395 0.14 -0.5
411,331 - CCNA_00395 0.16 -0.2
411,331 - CCNA_00395 0.16 -1.1
411,331 - CCNA_00395 0.16 -1.3
411,340 + CCNA_00395 0.16 -0.7
411,341 - CCNA_00395 0.16 +0.7
411,436 + CCNA_00395 0.21 -1.2
411,445 + CCNA_00395 0.22 -0.8
411,447 + CCNA_00395 0.22 +1.3
411,458 - CCNA_00395 0.23 -0.5
411,468 - CCNA_00395 0.23 -1.4
411,555 + CCNA_00395 0.28 -1.0
411,646 + CCNA_00395 0.33 +0.7
411,655 + CCNA_00395 0.34 -0.2
411,657 + CCNA_00395 0.34 -0.5
411,665 - CCNA_00395 0.34 -0.6
411,717 + CCNA_00395 0.37 -1.1
411,717 + CCNA_00395 0.37 +0.1
411,717 + CCNA_00395 0.37 -0.5
411,717 + CCNA_00395 0.37 -0.3
411,725 - CCNA_00395 0.38 +0.2
411,725 - CCNA_00395 0.38 -1.9
411,751 + CCNA_00395 0.39 -0.9
411,756 + CCNA_00395 0.39 +0.1
411,773 - CCNA_00395 0.40 -1.1
411,785 + CCNA_00395 0.41 -1.2
411,793 - CCNA_00395 0.41 +1.0
411,838 + CCNA_00395 0.44 +0.2
411,843 + +2.1
411,846 - CCNA_00395 0.44 -0.3
411,850 + CCNA_00395 0.45 -0.3
411,858 - CCNA_00395 0.45 -0.6
411,858 - CCNA_00395 0.45 +0.4
411,858 - CCNA_00395 0.45 -0.6
411,894 - CCNA_00395 0.47 -0.1

Or see this region's nucleotide sequence