Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23010

Experiment: rhizosphere sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS23005 and ABZR87_RS23010 overlap by 4 nucleotidesABZR87_RS23010 and ABZR87_RS23015 overlap by 4 nucleotides ABZR87_RS23005: ABZR87_RS23005 - carbamoyltransferase C-terminal domain-containing protein, at 1,520,726 to 1,522,552 _RS23005 ABZR87_RS23010: ABZR87_RS23010 - glycosyltransferase family A protein, at 1,522,549 to 1,523,604 _RS23010 ABZR87_RS23015: ABZR87_RS23015 - glycosyltransferase family 9 protein, at 1,523,601 to 1,524,746 _RS23015 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1521.803 kb on + strand, within ABZR87_RS23005at 1521.851 kb on + strand, within ABZR87_RS23005at 1521.852 kb on - strand, within ABZR87_RS23005at 1521.852 kb on - strand, within ABZR87_RS23005at 1522.283 kb on + strand, within ABZR87_RS23005at 1522.283 kb on + strand, within ABZR87_RS23005at 1522.284 kb on - strand, within ABZR87_RS23005at 1522.286 kb on + strand, within ABZR87_RS23005at 1522.287 kb on - strand, within ABZR87_RS23005at 1522.287 kb on - strand, within ABZR87_RS23005at 1522.792 kb on + strand, within ABZR87_RS23010at 1522.792 kb on + strand, within ABZR87_RS23010at 1522.793 kb on - strand, within ABZR87_RS23010at 1523.033 kb on - strand, within ABZR87_RS23010at 1523.220 kb on + strand, within ABZR87_RS23010at 1523.220 kb on + strand, within ABZR87_RS23010at 1523.220 kb on + strand, within ABZR87_RS23010at 1523.220 kb on + strand, within ABZR87_RS23010at 1523.221 kb on - strand, within ABZR87_RS23010at 1523.221 kb on - strand, within ABZR87_RS23010at 1523.221 kb on - strand, within ABZR87_RS23010at 1523.221 kb on - strand, within ABZR87_RS23010at 1523.221 kb on - strand, within ABZR87_RS23010at 1523.299 kb on + strand, within ABZR87_RS23010at 1523.300 kb on - strand, within ABZR87_RS23010at 1523.300 kb on - strand, within ABZR87_RS23010at 1523.356 kb on + strand, within ABZR87_RS23010at 1523.356 kb on + strand, within ABZR87_RS23010at 1523.357 kb on - strand, within ABZR87_RS23010at 1523.357 kb on - strand, within ABZR87_RS23010at 1523.359 kb on + strand, within ABZR87_RS23010at 1523.360 kb on - strand, within ABZR87_RS23010at 1523.558 kb on - strandat 1523.600 kb on + strandat 1523.600 kb on + strandat 1523.775 kb on + strand, within ABZR87_RS23015at 1523.868 kb on + strand, within ABZR87_RS23015at 1523.868 kb on + strand, within ABZR87_RS23015at 1523.868 kb on + strand, within ABZR87_RS23015at 1523.869 kb on - strand, within ABZR87_RS23015at 1524.072 kb on - strand, within ABZR87_RS23015at 1524.132 kb on + strand, within ABZR87_RS23015at 1524.169 kb on + strand, within ABZR87_RS23015at 1524.333 kb on - strand, within ABZR87_RS23015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
remove
1,521,803 + ABZR87_RS23005 0.59 -0.8
1,521,851 + ABZR87_RS23005 0.62 +0.4
1,521,852 - ABZR87_RS23005 0.62 +0.5
1,521,852 - ABZR87_RS23005 0.62 -0.0
1,522,283 + ABZR87_RS23005 0.85 +1.5
1,522,283 + ABZR87_RS23005 0.85 +0.5
1,522,284 - ABZR87_RS23005 0.85 +0.8
1,522,286 + ABZR87_RS23005 0.85 +0.4
1,522,287 - ABZR87_RS23005 0.85 +2.1
1,522,287 - ABZR87_RS23005 0.85 +0.9
1,522,792 + ABZR87_RS23010 0.23 -2.1
1,522,792 + ABZR87_RS23010 0.23 +0.7
1,522,793 - ABZR87_RS23010 0.23 -1.8
1,523,033 - ABZR87_RS23010 0.46 +0.5
1,523,220 + ABZR87_RS23010 0.64 -0.1
1,523,220 + ABZR87_RS23010 0.64 -0.0
1,523,220 + ABZR87_RS23010 0.64 +0.3
1,523,220 + ABZR87_RS23010 0.64 +1.0
1,523,221 - ABZR87_RS23010 0.64 -2.8
1,523,221 - ABZR87_RS23010 0.64 +0.5
1,523,221 - ABZR87_RS23010 0.64 -0.9
1,523,221 - ABZR87_RS23010 0.64 +0.6
1,523,221 - ABZR87_RS23010 0.64 -0.0
1,523,299 + ABZR87_RS23010 0.71 -1.4
1,523,300 - ABZR87_RS23010 0.71 -0.7
1,523,300 - ABZR87_RS23010 0.71 -0.8
1,523,356 + ABZR87_RS23010 0.76 +0.3
1,523,356 + ABZR87_RS23010 0.76 -0.7
1,523,357 - ABZR87_RS23010 0.77 +1.0
1,523,357 - ABZR87_RS23010 0.77 +0.0
1,523,359 + ABZR87_RS23010 0.77 -0.8
1,523,360 - ABZR87_RS23010 0.77 +0.3
1,523,558 - +1.6
1,523,600 + -1.3
1,523,600 + +1.0
1,523,775 + ABZR87_RS23015 0.15 -0.1
1,523,868 + ABZR87_RS23015 0.23 -0.4
1,523,868 + ABZR87_RS23015 0.23 +2.1
1,523,868 + ABZR87_RS23015 0.23 -0.1
1,523,869 - ABZR87_RS23015 0.23 +0.4
1,524,072 - ABZR87_RS23015 0.41 +0.3
1,524,132 + ABZR87_RS23015 0.46 -1.0
1,524,169 + ABZR87_RS23015 0.50 +0.6
1,524,333 - ABZR87_RS23015 0.64 +0.0

Or see this region's nucleotide sequence