Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21905

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21895 and ABZR87_RS21900 are separated by 101 nucleotidesABZR87_RS21900 and ABZR87_RS21905 are separated by 183 nucleotidesABZR87_RS21905 and ABZR87_RS21910 are separated by 82 nucleotides ABZR87_RS21895: ABZR87_RS21895 - LysR family transcriptional regulator, at 1,289,456 to 1,290,322 _RS21895 ABZR87_RS21900: ABZR87_RS21900 - LysE family transporter, at 1,290,424 to 1,291,050 _RS21900 ABZR87_RS21905: ABZR87_RS21905 - hypothetical protein, at 1,291,234 to 1,292,289 _RS21905 ABZR87_RS21910: ABZR87_RS21910 - MFS transporter, at 1,292,372 to 1,293,613 _RS21910 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -2 -1 0 1 2at 1290.302 kb on - strandat 1290.302 kb on - strandat 1290.302 kb on - strandat 1290.355 kb on + strandat 1290.355 kb on + strandat 1290.583 kb on + strand, within ABZR87_RS21900at 1290.583 kb on + strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.584 kb on - strand, within ABZR87_RS21900at 1290.585 kb on + strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.586 kb on - strand, within ABZR87_RS21900at 1290.661 kb on + strand, within ABZR87_RS21900at 1290.662 kb on - strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.829 kb on + strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1290.830 kb on - strand, within ABZR87_RS21900at 1291.116 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strandat 1291.286 kb on - strandat 1291.508 kb on - strand, within ABZR87_RS21905at 1291.529 kb on + strand, within ABZR87_RS21905at 1291.591 kb on + strand, within ABZR87_RS21905at 1291.591 kb on + strand, within ABZR87_RS21905at 1291.591 kb on + strand, within ABZR87_RS21905at 1291.592 kb on - strand, within ABZR87_RS21905at 1291.592 kb on - strand, within ABZR87_RS21905at 1291.924 kb on + strand, within ABZR87_RS21905at 1291.924 kb on + strand, within ABZR87_RS21905at 1291.925 kb on - strand, within ABZR87_RS21905at 1291.925 kb on - strand, within ABZR87_RS21905at 1291.996 kb on + strand, within ABZR87_RS21905at 1291.997 kb on - strand, within ABZR87_RS21905at 1292.023 kb on + strand, within ABZR87_RS21905at 1292.023 kb on + strand, within ABZR87_RS21905at 1292.023 kb on + strand, within ABZR87_RS21905at 1292.023 kb on + strand, within ABZR87_RS21905at 1292.023 kb on + strand, within ABZR87_RS21905at 1292.024 kb on - strand, within ABZR87_RS21905at 1292.024 kb on - strand, within ABZR87_RS21905at 1292.185 kb on + strandat 1292.185 kb on + strandat 1292.185 kb on + strandat 1292.185 kb on + strandat 1292.186 kb on - strandat 1292.186 kb on - strandat 1292.186 kb on - strandat 1292.288 kb on - strandat 1292.288 kb on - strandat 1292.457 kb on + strandat 1292.466 kb on + strandat 1292.466 kb on + strandat 1292.467 kb on - strandat 1292.467 kb on - strandat 1292.467 kb on - strandat 1292.467 kb on - strandat 1292.467 kb on - strandat 1292.467 kb on - strandat 1292.590 kb on - strand, within ABZR87_RS21910at 1292.590 kb on - strand, within ABZR87_RS21910at 1292.856 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.859 kb on + strand, within ABZR87_RS21910at 1292.860 kb on - strand, within ABZR87_RS21910at 1292.860 kb on - strand, within ABZR87_RS21910at 1292.860 kb on - strand, within ABZR87_RS21910at 1292.860 kb on - strand, within ABZR87_RS21910at 1292.881 kb on - strand, within ABZR87_RS21910at 1292.881 kb on - strand, within ABZR87_RS21910at 1293.012 kb on + strand, within ABZR87_RS21910at 1293.012 kb on + strand, within ABZR87_RS21910at 1293.012 kb on + strand, within ABZR87_RS21910at 1293.013 kb on - strand, within ABZR87_RS21910at 1293.031 kb on - strand, within ABZR87_RS21910at 1293.091 kb on - strand, within ABZR87_RS21910at 1293.196 kb on + strand, within ABZR87_RS21910at 1293.197 kb on - strand, within ABZR87_RS21910at 1293.197 kb on - strand, within ABZR87_RS21910at 1293.197 kb on - strand, within ABZR87_RS21910

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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1,290,302 - +0.9
1,290,302 - +0.6
1,290,302 - -0.1
1,290,355 + +0.1
1,290,355 + -0.1
1,290,583 + ABZR87_RS21900 0.25 -0.1
1,290,583 + ABZR87_RS21900 0.25 -0.8
1,290,584 - ABZR87_RS21900 0.26 -1.1
1,290,584 - ABZR87_RS21900 0.26 +0.4
1,290,584 - ABZR87_RS21900 0.26 +0.4
1,290,584 - ABZR87_RS21900 0.26 -0.9
1,290,584 - ABZR87_RS21900 0.26 -0.5
1,290,584 - ABZR87_RS21900 0.26 +0.9
1,290,585 + ABZR87_RS21900 0.26 -0.1
1,290,586 - ABZR87_RS21900 0.26 +1.4
1,290,586 - ABZR87_RS21900 0.26 -0.2
1,290,586 - ABZR87_RS21900 0.26 +0.1
1,290,661 + ABZR87_RS21900 0.38 -0.3
1,290,662 - ABZR87_RS21900 0.38 -0.4
1,290,829 + ABZR87_RS21900 0.65 -0.8
1,290,829 + ABZR87_RS21900 0.65 -0.9
1,290,829 + ABZR87_RS21900 0.65 -0.2
1,290,829 + ABZR87_RS21900 0.65 -0.4
1,290,829 + ABZR87_RS21900 0.65 +0.0
1,290,830 - ABZR87_RS21900 0.65 -1.1
1,290,830 - ABZR87_RS21900 0.65 +1.1
1,290,830 - ABZR87_RS21900 0.65 -0.5
1,290,830 - ABZR87_RS21900 0.65 -0.0
1,290,830 - ABZR87_RS21900 0.65 +0.3
1,290,830 - ABZR87_RS21900 0.65 +0.5
1,290,830 - ABZR87_RS21900 0.65 -0.4
1,291,116 - -0.2
1,291,286 - +0.7
1,291,286 - -1.3
1,291,286 - +0.4
1,291,286 - -0.5
1,291,508 - ABZR87_RS21905 0.26 +0.7
1,291,529 + ABZR87_RS21905 0.28 -0.5
1,291,591 + ABZR87_RS21905 0.34 +0.6
1,291,591 + ABZR87_RS21905 0.34 +0.2
1,291,591 + ABZR87_RS21905 0.34 +0.2
1,291,592 - ABZR87_RS21905 0.34 -0.2
1,291,592 - ABZR87_RS21905 0.34 +0.1
1,291,924 + ABZR87_RS21905 0.65 +0.1
1,291,924 + ABZR87_RS21905 0.65 +0.7
1,291,925 - ABZR87_RS21905 0.65 +1.2
1,291,925 - ABZR87_RS21905 0.65 +0.3
1,291,996 + ABZR87_RS21905 0.72 -0.1
1,291,997 - ABZR87_RS21905 0.72 -0.0
1,292,023 + ABZR87_RS21905 0.75 -0.1
1,292,023 + ABZR87_RS21905 0.75 -2.3
1,292,023 + ABZR87_RS21905 0.75 +0.1
1,292,023 + ABZR87_RS21905 0.75 -0.2
1,292,023 + ABZR87_RS21905 0.75 +0.4
1,292,024 - ABZR87_RS21905 0.75 +1.8
1,292,024 - ABZR87_RS21905 0.75 -0.1
1,292,185 + -0.6
1,292,185 + -0.1
1,292,185 + -1.0
1,292,185 + -0.2
1,292,186 - -0.2
1,292,186 - -0.5
1,292,186 - +0.1
1,292,288 - -0.1
1,292,288 - -0.2
1,292,457 + +1.2
1,292,466 + -0.7
1,292,466 + -1.2
1,292,467 - +0.8
1,292,467 - +0.1
1,292,467 - -0.3
1,292,467 - -0.1
1,292,467 - -0.6
1,292,467 - +2.1
1,292,590 - ABZR87_RS21910 0.18 -1.3
1,292,590 - ABZR87_RS21910 0.18 -0.5
1,292,856 + ABZR87_RS21910 0.39 -0.2
1,292,859 + ABZR87_RS21910 0.39 -0.4
1,292,859 + ABZR87_RS21910 0.39 -0.0
1,292,859 + ABZR87_RS21910 0.39 +0.2
1,292,859 + ABZR87_RS21910 0.39 -0.0
1,292,859 + ABZR87_RS21910 0.39 -0.6
1,292,859 + ABZR87_RS21910 0.39 +0.3
1,292,859 + ABZR87_RS21910 0.39 +1.3
1,292,859 + ABZR87_RS21910 0.39 +0.1
1,292,859 + ABZR87_RS21910 0.39 -0.6
1,292,860 - ABZR87_RS21910 0.39 -0.4
1,292,860 - ABZR87_RS21910 0.39 +0.1
1,292,860 - ABZR87_RS21910 0.39 +0.4
1,292,860 - ABZR87_RS21910 0.39 -0.8
1,292,881 - ABZR87_RS21910 0.41 +1.5
1,292,881 - ABZR87_RS21910 0.41 +0.3
1,293,012 + ABZR87_RS21910 0.52 +1.5
1,293,012 + ABZR87_RS21910 0.52 -0.1
1,293,012 + ABZR87_RS21910 0.52 +0.2
1,293,013 - ABZR87_RS21910 0.52 -0.3
1,293,031 - ABZR87_RS21910 0.53 +0.6
1,293,091 - ABZR87_RS21910 0.58 +0.6
1,293,196 + ABZR87_RS21910 0.66 +0.8
1,293,197 - ABZR87_RS21910 0.66 -0.3
1,293,197 - ABZR87_RS21910 0.66 -0.3
1,293,197 - ABZR87_RS21910 0.66 -0.2

Or see this region's nucleotide sequence