Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19480 and ABZR87_RS19485 are separated by 119 nucleotides ABZR87_RS19485 and ABZR87_RS19490 are separated by 414 nucleotides
ABZR87_RS19480: ABZR87_RS19480 - methyl-accepting chemotaxis protein, at 740,390 to 741,931
_RS19480
ABZR87_RS19485: ABZR87_RS19485 - H-NS histone family protein, at 742,051 to 742,359
_RS19485
ABZR87_RS19490: ABZR87_RS19490 - bifunctional diguanylate cyclase/phosphodiesterase, at 742,774 to 744,861
_RS19490
Position (kb) 742
743 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18 at 741.259 kb on + strand, within ABZR87_RS19480 at 741.259 kb on + strand, within ABZR87_RS19480 at 741.260 kb on - strand, within ABZR87_RS19480 at 741.382 kb on + strand, within ABZR87_RS19480 at 741.383 kb on - strand, within ABZR87_RS19480 at 741.383 kb on - strand, within ABZR87_RS19480 at 741.929 kb on + strand at 741.930 kb on - strand at 741.955 kb on + strand at 741.956 kb on - strand at 741.956 kb on - strand at 741.958 kb on + strand at 741.959 kb on - strand at 741.959 kb on - strand at 741.959 kb on - strand at 742.137 kb on + strand, within ABZR87_RS19485 at 742.138 kb on - strand, within ABZR87_RS19485 at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.349 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.418 kb on + strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.419 kb on - strand at 742.420 kb on + strand at 742.421 kb on - strand at 742.544 kb on + strand at 742.545 kb on - strand at 742.550 kb on + strand at 742.550 kb on + strand at 742.551 kb on - strand at 742.551 kb on - strand at 742.557 kb on + strand at 742.557 kb on + strand at 742.557 kb on + strand at 742.558 kb on - strand at 742.558 kb on - strand at 742.560 kb on + strand at 742.560 kb on + strand at 742.561 kb on - strand at 742.631 kb on - strand at 742.638 kb on + strand at 742.638 kb on + strand at 742.639 kb on - strand at 742.639 kb on - strand at 742.646 kb on + strand at 742.690 kb on - strand at 742.690 kb on - strand at 742.771 kb on + strand at 742.771 kb on + strand at 742.772 kb on - strand at 742.781 kb on + strand at 742.781 kb on + strand at 742.782 kb on - strand at 742.796 kb on - strand at 742.838 kb on + strand at 742.838 kb on + strand at 742.839 kb on - strand at 742.839 kb on - strand at 743.045 kb on + strand, within ABZR87_RS19490 at 743.164 kb on - strand, within ABZR87_RS19490 at 743.198 kb on + strand, within ABZR87_RS19490 at 743.199 kb on - strand, within ABZR87_RS19490
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 741,259 + ABZR87_RS19480 0.56 -0.3 741,259 + ABZR87_RS19480 0.56 -0.1 741,260 - ABZR87_RS19480 0.56 -0.2 741,382 + ABZR87_RS19480 0.64 -0.2 741,383 - ABZR87_RS19480 0.64 -1.3 741,383 - ABZR87_RS19480 0.64 +0.0 741,929 + +0.8 741,930 - +0.1 741,955 + -0.3 741,956 - -1.8 741,956 - -1.5 741,958 + +0.1 741,959 - -1.4 741,959 - -0.9 741,959 - +0.8 742,137 + ABZR87_RS19485 0.28 -1.7 742,138 - ABZR87_RS19485 0.28 -1.6 742,349 + +0.1 742,349 + -0.7 742,349 + +1.2 742,349 + -1.4 742,349 + -1.0 742,349 + -0.3 742,418 + +0.4 742,418 + -0.6 742,418 + -0.3 742,418 + -1.8 742,419 - +11.7 742,419 - +12.0 742,419 - +12.0 742,419 - +7.0 742,419 - +10.2 742,420 + -0.7 742,421 - +18.1 742,544 + -0.2 742,545 - +4.5 742,550 + -0.4 742,550 + -1.0 742,551 - +5.4 742,551 - +4.6 742,557 + -1.0 742,557 + -1.3 742,557 + +0.7 742,558 - +2.7 742,558 - +4.7 742,560 + +0.1 742,560 + -1.3 742,561 - +4.1 742,631 - +3.5 742,638 + -1.9 742,638 + -1.4 742,639 - +4.0 742,639 - +4.3 742,646 + -0.8 742,690 - +3.9 742,690 - +3.1 742,771 + -2.1 742,771 + -0.7 742,772 - +2.5 742,781 + -0.1 742,781 + -0.7 742,782 - +2.9 742,796 - +2.8 742,838 + -0.3 742,838 + -0.2 742,839 - +0.4 742,839 - +1.2 743,045 + ABZR87_RS19490 0.13 -0.7 743,164 - ABZR87_RS19490 0.19 -0.2 743,198 + ABZR87_RS19490 0.20 -1.2 743,199 - ABZR87_RS19490 0.20 -0.1
Or see this region's nucleotide sequence