Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19000 and ABZR87_RS19005 are separated by 650 nucleotides ABZR87_RS19005 and ABZR87_RS19010 are separated by 79 nucleotides ABZR87_RS19010 and ABZR87_RS19015 are separated by 301 nucleotides
ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580
_RS19000
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
ABZR87_RS19010: ABZR87_RS19010 - acyloxyacyl hydrolase, at 622,657 to 623,220
_RS19010
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.403 kb on - strand, within ABZR87_RS19000 at 620.505 kb on + strand, within ABZR87_RS19000 at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.647 kb on - strand at 620.647 kb on - strand at 620.648 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.662 kb on - strand at 620.812 kb on + strand at 620.813 kb on - strand at 620.838 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.019 kb on + strand at 621.020 kb on - strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.281 kb on - strand at 621.416 kb on + strand, within ABZR87_RS19005 at 621.416 kb on + strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.633 kb on + strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.634 kb on - strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.659 kb on + strand, within ABZR87_RS19005 at 621.660 kb on - strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.765 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.813 kb on + strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.814 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 621.822 kb on - strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.155 kb on + strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.156 kb on - strand, within ABZR87_RS19005 at 622.395 kb on + strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.396 kb on - strand, within ABZR87_RS19005 at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.452 kb on + strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.453 kb on - strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.506 kb on + strand at 622.507 kb on - strand at 622.583 kb on + strand at 622.667 kb on + strand at 622.668 kb on - strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.676 kb on + strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.677 kb on - strand at 622.745 kb on + strand, within ABZR87_RS19010 at 623.075 kb on + strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.076 kb on - strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.108 kb on + strand, within ABZR87_RS19010 at 623.429 kb on + strand at 623.429 kb on + strand at 623.429 kb on + strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.430 kb on - strand at 623.431 kb on + strand at 623.432 kb on - strand at 623.441 kb on + strand at 623.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 620,289 + ABZR87_RS19000 0.40 +0.0 620,289 + ABZR87_RS19000 0.40 +0.6 620,402 + ABZR87_RS19000 0.63 -0.2 620,402 + ABZR87_RS19000 0.63 -0.3 620,403 - ABZR87_RS19000 0.63 +0.1 620,505 + ABZR87_RS19000 0.84 +0.7 620,580 + -2.1 620,580 + -0.3 620,580 + +0.3 620,580 + +0.7 620,580 + -1.3 620,580 + +0.4 620,580 + -0.6 620,581 - +0.3 620,581 - +0.3 620,581 - -0.2 620,581 - -0.0 620,647 - -1.3 620,647 - +0.6 620,648 + +0.2 620,658 + -1.3 620,658 + +0.6 620,658 + -1.0 620,658 + +1.1 620,658 + +1.0 620,658 + +0.4 620,658 + -1.3 620,658 + -0.9 620,659 - +0.2 620,659 - +0.3 620,659 - +1.4 620,659 - +0.5 620,659 - +0.8 620,659 - -0.4 620,661 + +1.0 620,661 + -0.6 620,661 + -1.2 620,662 - +0.7 620,812 + +0.4 620,813 - +0.0 620,838 + -0.9 621,017 + +0.8 621,017 + +1.3 621,017 + +0.1 621,017 + +1.4 621,017 + +0.1 621,017 + +1.4 621,017 + -0.3 621,018 - +2.0 621,018 - +1.4 621,018 - +2.5 621,018 - +1.2 621,018 - +1.5 621,019 + +0.7 621,020 - +2.6 621,252 + +1.6 621,252 + +5.0 621,252 + +2.0 621,252 + +1.9 621,252 + +2.0 621,252 + +1.8 621,252 + +2.0 621,252 + +1.2 621,252 + +3.0 621,253 - +2.4 621,253 - +2.9 621,253 - +2.2 621,253 - +2.1 621,253 - +2.4 621,253 - +2.1 621,253 - +1.6 621,253 - +1.9 621,253 - +3.3 621,253 - +2.3 621,253 - +2.0 621,253 - +1.9 621,253 - +1.4 621,253 - +1.9 621,254 + +1.9 621,254 + +2.2 621,254 + +2.1 621,255 - +1.8 621,255 - +2.3 621,255 - +2.1 621,255 - +3.2 621,281 - +1.5 621,416 + ABZR87_RS19005 0.14 +1.9 621,416 + ABZR87_RS19005 0.14 +2.7 621,417 - ABZR87_RS19005 0.14 +1.1 621,417 - ABZR87_RS19005 0.14 +1.9 621,417 - ABZR87_RS19005 0.14 +2.9 621,417 - ABZR87_RS19005 0.14 +1.0 621,417 - ABZR87_RS19005 0.14 +2.4 621,417 - ABZR87_RS19005 0.14 +1.6 621,497 + ABZR87_RS19005 0.20 +1.6 621,497 + ABZR87_RS19005 0.20 +2.2 621,633 + ABZR87_RS19005 0.30 +2.0 621,633 + ABZR87_RS19005 0.30 +2.1 621,633 + ABZR87_RS19005 0.30 +2.7 621,633 + ABZR87_RS19005 0.30 +2.4 621,633 + ABZR87_RS19005 0.30 +2.4 621,633 + ABZR87_RS19005 0.30 +2.0 621,634 - ABZR87_RS19005 0.30 +2.1 621,634 - ABZR87_RS19005 0.30 +1.9 621,634 - ABZR87_RS19005 0.30 +1.1 621,634 - ABZR87_RS19005 0.30 +1.5 621,634 - ABZR87_RS19005 0.30 +2.8 621,634 - ABZR87_RS19005 0.30 +1.6 621,659 + ABZR87_RS19005 0.32 +2.1 621,659 + ABZR87_RS19005 0.32 +2.5 621,659 + ABZR87_RS19005 0.32 +1.5 621,660 - ABZR87_RS19005 0.32 +1.4 621,765 + ABZR87_RS19005 0.40 +3.0 621,765 + ABZR87_RS19005 0.40 +2.9 621,813 + ABZR87_RS19005 0.43 +1.9 621,813 + ABZR87_RS19005 0.43 +0.9 621,814 - ABZR87_RS19005 0.43 +0.4 621,814 - ABZR87_RS19005 0.43 +0.9 621,822 - ABZR87_RS19005 0.44 +2.2 621,822 - ABZR87_RS19005 0.44 +1.1 622,155 + ABZR87_RS19005 0.69 +1.6 622,155 + ABZR87_RS19005 0.69 +2.1 622,155 + ABZR87_RS19005 0.69 +2.1 622,155 + ABZR87_RS19005 0.69 +2.7 622,156 - ABZR87_RS19005 0.69 +2.5 622,156 - ABZR87_RS19005 0.69 +1.6 622,395 + ABZR87_RS19005 0.86 +1.1 622,396 - ABZR87_RS19005 0.86 +1.8 622,396 - ABZR87_RS19005 0.86 +2.0 622,452 + +0.6 622,452 + +2.7 622,452 + +1.3 622,452 + +1.5 622,452 + +1.2 622,452 + +1.7 622,453 - +2.3 622,453 - +2.5 622,453 - +2.1 622,506 + +1.2 622,506 + +0.9 622,506 + -0.7 622,506 + +0.1 622,507 - +0.1 622,583 + -2.0 622,667 + +0.6 622,668 - +0.8 622,676 + -1.1 622,676 + -0.2 622,676 + +0.6 622,676 + +1.3 622,677 - +0.9 622,677 - -0.9 622,677 - +0.7 622,745 + ABZR87_RS19010 0.16 +0.2 623,075 + ABZR87_RS19010 0.74 -0.0 623,076 - ABZR87_RS19010 0.74 +1.0 623,076 - ABZR87_RS19010 0.74 +0.5 623,108 + ABZR87_RS19010 0.80 -1.3 623,108 + ABZR87_RS19010 0.80 -1.9 623,429 + -0.6 623,429 + -0.5 623,429 + +0.1 623,430 - +0.2 623,430 - +0.9 623,430 - -0.6 623,430 - -0.5 623,430 - -0.4 623,430 - -0.0 623,430 - +0.1 623,430 - +0.4 623,431 + -0.2 623,432 - +1.1 623,441 + +0.6 623,442 - +0.3
Or see this region's nucleotide sequence