Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18850 and ABZR87_RS18855 are separated by 112 nucleotides ABZR87_RS18855 and ABZR87_RS18860 are separated by 162 nucleotides ABZR87_RS18860 and ABZR87_RS18865 are separated by 387 nucleotides
ABZR87_RS18850: ABZR87_RS18850 - PAS domain-containing methyl-accepting chemotaxis protein, at 581,848 to 583,392
_RS18850
ABZR87_RS18855: ABZR87_RS18855 - GlsB/YeaQ/YmgE family stress response membrane protein, at 583,505 to 583,759
_RS18855
ABZR87_RS18860: ABZR87_RS18860 - hypothetical protein, at 583,922 to 584,215
_RS18860
ABZR87_RS18865: ABZR87_RS18865 - MFS transporter, at 584,603 to 585,925
_RS18865
Position (kb) 583
584 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.451 kb on + strand at 583.451 kb on + strand at 583.451 kb on + strand at 583.452 kb on - strand at 583.452 kb on - strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.467 kb on + strand at 583.467 kb on + strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.841 kb on + strand at 583.841 kb on + strand at 583.841 kb on + strand at 583.842 kb on - strand at 583.842 kb on - strand at 583.842 kb on - strand at 583.958 kb on + strand, within ABZR87_RS18860 at 583.959 kb on - strand, within ABZR87_RS18860 at 584.015 kb on + strand, within ABZR87_RS18860 at 584.016 kb on - strand, within ABZR87_RS18860 at 584.016 kb on - strand, within ABZR87_RS18860 at 584.022 kb on - strand, within ABZR87_RS18860 at 584.030 kb on + strand, within ABZR87_RS18860 at 584.076 kb on + strand, within ABZR87_RS18860 at 584.077 kb on - strand, within ABZR87_RS18860 at 584.210 kb on + strand at 584.211 kb on - strand at 584.435 kb on + strand at 584.435 kb on + strand at 584.436 kb on - strand at 584.436 kb on - strand at 584.446 kb on + strand at 584.447 kb on - strand at 584.511 kb on + strand at 584.511 kb on + strand at 584.511 kb on + strand at 584.512 kb on - strand at 584.699 kb on + strand at 584.699 kb on + strand at 584.700 kb on - strand at 584.700 kb on - strand at 584.700 kb on - strand at 584.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 583,451 + -0.2 583,451 + +0.2 583,451 + -0.1 583,452 - +0.7 583,452 - +0.5 583,454 + +0.2 583,454 + +0.5 583,454 + +0.4 583,454 + +0.4 583,454 + +0.2 583,454 + +0.2 583,454 + +0.3 583,454 + +0.3 583,454 + +0.2 583,455 - -0.3 583,455 - -0.5 583,455 - +1.0 583,455 - +0.3 583,455 - -0.3 583,455 - +0.2 583,455 - -1.2 583,455 - -0.2 583,455 - +0.2 583,455 - -0.9 583,455 - +1.1 583,455 - +2.0 583,455 - +0.5 583,455 - -0.2 583,460 + -0.1 583,460 + +1.5 583,460 + +0.9 583,460 + +0.5 583,467 + -0.4 583,467 + +0.1 583,468 - -0.5 583,468 - -0.6 583,468 - +1.3 583,468 - +0.4 583,841 + +1.0 583,841 + -0.3 583,841 + +0.4 583,842 - +1.4 583,842 - -1.5 583,842 - -0.5 583,958 + ABZR87_RS18860 0.12 -1.0 583,959 - ABZR87_RS18860 0.13 +2.2 584,015 + ABZR87_RS18860 0.32 +0.4 584,016 - ABZR87_RS18860 0.32 -0.3 584,016 - ABZR87_RS18860 0.32 +1.9 584,022 - ABZR87_RS18860 0.34 +0.8 584,030 + ABZR87_RS18860 0.37 +0.7 584,076 + ABZR87_RS18860 0.52 +0.1 584,077 - ABZR87_RS18860 0.53 +1.2 584,210 + -0.5 584,211 - +0.7 584,435 + -0.9 584,435 + +0.2 584,436 - -0.6 584,436 - +0.4 584,446 + +1.4 584,447 - +0.5 584,511 + +0.2 584,511 + +0.8 584,511 + -1.1 584,512 - +0.6 584,699 + +0.2 584,699 + +0.9 584,700 - -2.0 584,700 - +1.5 584,700 - -0.3 584,700 - +0.1
Or see this region's nucleotide sequence