Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18320

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18310 and ABZR87_RS18315 are separated by 96 nucleotidesABZR87_RS18315 and ABZR87_RS18320 overlap by 14 nucleotidesABZR87_RS18320 and ABZR87_RS18325 are separated by 7 nucleotidesABZR87_RS18325 and ABZR87_RS18330 are separated by 2 nucleotides ABZR87_RS18310: ABZR87_RS18310 - sulfonate ABC transporter substrate-binding protein, at 475,457 to 476,449 _RS18310 ABZR87_RS18315: ABZR87_RS18315 - DUF971 domain-containing protein, at 476,546 to 476,836 _RS18315 ABZR87_RS18320: ABZR87_RS18320 - HEAT repeat domain-containing protein, at 476,823 to 477,782 _RS18320 ABZR87_RS18325: ABZR87_RS18325 - ferredoxin family protein, at 477,790 to 478,056 _RS18325 ABZR87_RS18330: ABZR87_RS18330 - fumarate reductase/succinate dehydrogenase flavoprotein subunit, at 478,059 to 479,783 _RS18330 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1at 475.849 kb on - strand, within ABZR87_RS18310at 475.852 kb on - strand, within ABZR87_RS18310at 475.852 kb on - strand, within ABZR87_RS18310at 475.852 kb on - strand, within ABZR87_RS18310at 475.852 kb on - strand, within ABZR87_RS18310at 475.923 kb on + strand, within ABZR87_RS18310at 475.923 kb on + strand, within ABZR87_RS18310at 475.983 kb on + strand, within ABZR87_RS18310at 475.984 kb on - strand, within ABZR87_RS18310at 476.109 kb on + strand, within ABZR87_RS18310at 476.109 kb on + strand, within ABZR87_RS18310at 476.109 kb on + strand, within ABZR87_RS18310at 476.110 kb on - strand, within ABZR87_RS18310at 476.110 kb on - strand, within ABZR87_RS18310at 476.110 kb on - strand, within ABZR87_RS18310at 476.110 kb on - strand, within ABZR87_RS18310at 476.141 kb on + strand, within ABZR87_RS18310at 476.164 kb on - strand, within ABZR87_RS18310at 476.241 kb on + strand, within ABZR87_RS18310at 476.241 kb on + strand, within ABZR87_RS18310at 476.242 kb on - strand, within ABZR87_RS18310at 476.428 kb on + strandat 476.487 kb on + strandat 476.487 kb on + strandat 476.532 kb on + strandat 476.532 kb on + strandat 476.558 kb on + strandat 476.558 kb on + strandat 476.558 kb on + strandat 476.592 kb on + strand, within ABZR87_RS18315at 476.592 kb on + strand, within ABZR87_RS18315at 476.592 kb on + strand, within ABZR87_RS18315at 476.593 kb on - strand, within ABZR87_RS18315at 477.077 kb on - strand, within ABZR87_RS18320at 477.077 kb on - strand, within ABZR87_RS18320at 477.478 kb on + strand, within ABZR87_RS18320at 477.803 kb on + strandat 477.860 kb on + strand, within ABZR87_RS18325at 477.860 kb on + strand, within ABZR87_RS18325at 478.127 kb on - strandat 478.177 kb on + strandat 478.177 kb on + strandat 478.177 kb on + strandat 478.223 kb on - strandat 478.241 kb on - strand, within ABZR87_RS18330at 478.241 kb on - strand, within ABZR87_RS18330at 478.438 kb on + strand, within ABZR87_RS18330at 478.466 kb on - strand, within ABZR87_RS18330at 478.582 kb on + strand, within ABZR87_RS18330at 478.582 kb on + strand, within ABZR87_RS18330at 478.583 kb on - strand, within ABZR87_RS18330at 478.583 kb on - strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.615 kb on + strand, within ABZR87_RS18330at 478.616 kb on - strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.636 kb on + strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.637 kb on - strand, within ABZR87_RS18330at 478.673 kb on - strand, within ABZR87_RS18330at 478.711 kb on + strand, within ABZR87_RS18330at 478.712 kb on - strand, within ABZR87_RS18330at 478.712 kb on - strand, within ABZR87_RS18330

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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475,849 - ABZR87_RS18310 0.39 -0.1
475,852 - ABZR87_RS18310 0.40 +0.1
475,852 - ABZR87_RS18310 0.40 -1.0
475,852 - ABZR87_RS18310 0.40 -1.6
475,852 - ABZR87_RS18310 0.40 +0.8
475,923 + ABZR87_RS18310 0.47 +0.6
475,923 + ABZR87_RS18310 0.47 +0.6
475,983 + ABZR87_RS18310 0.53 +0.8
475,984 - ABZR87_RS18310 0.53 -1.3
476,109 + ABZR87_RS18310 0.66 +0.1
476,109 + ABZR87_RS18310 0.66 +0.5
476,109 + ABZR87_RS18310 0.66 -0.6
476,110 - ABZR87_RS18310 0.66 +0.9
476,110 - ABZR87_RS18310 0.66 -1.0
476,110 - ABZR87_RS18310 0.66 -0.1
476,110 - ABZR87_RS18310 0.66 +0.1
476,141 + ABZR87_RS18310 0.69 +0.3
476,164 - ABZR87_RS18310 0.71 -0.7
476,241 + ABZR87_RS18310 0.79 +1.1
476,241 + ABZR87_RS18310 0.79 +1.6
476,242 - ABZR87_RS18310 0.79 -1.5
476,428 + -0.5
476,487 + +0.1
476,487 + -1.0
476,532 + -0.2
476,532 + -2.0
476,558 + +0.4
476,558 + -0.5
476,558 + +0.2
476,592 + ABZR87_RS18315 0.16 +1.1
476,592 + ABZR87_RS18315 0.16 -0.1
476,592 + ABZR87_RS18315 0.16 -0.0
476,593 - ABZR87_RS18315 0.16 +0.2
477,077 - ABZR87_RS18320 0.26 -1.4
477,077 - ABZR87_RS18320 0.26 +0.2
477,478 + ABZR87_RS18320 0.68 -0.5
477,803 + -0.4
477,860 + ABZR87_RS18325 0.26 +0.2
477,860 + ABZR87_RS18325 0.26 +0.3
478,127 - +1.2
478,177 + -0.0
478,177 + +0.3
478,177 + -1.3
478,223 - -0.6
478,241 - ABZR87_RS18330 0.11 +0.7
478,241 - ABZR87_RS18330 0.11 -0.9
478,438 + ABZR87_RS18330 0.22 +0.7
478,466 - ABZR87_RS18330 0.24 +1.2
478,582 + ABZR87_RS18330 0.30 +0.2
478,582 + ABZR87_RS18330 0.30 +0.1
478,583 - ABZR87_RS18330 0.30 -0.4
478,583 - ABZR87_RS18330 0.30 -0.0
478,615 + ABZR87_RS18330 0.32 -0.2
478,615 + ABZR87_RS18330 0.32 +0.4
478,615 + ABZR87_RS18330 0.32 -0.8
478,615 + ABZR87_RS18330 0.32 +0.2
478,616 - ABZR87_RS18330 0.32 +0.1
478,636 + ABZR87_RS18330 0.33 -0.9
478,636 + ABZR87_RS18330 0.33 -0.6
478,636 + ABZR87_RS18330 0.33 +1.2
478,637 - ABZR87_RS18330 0.34 -0.0
478,637 - ABZR87_RS18330 0.34 -0.2
478,637 - ABZR87_RS18330 0.34 +0.1
478,637 - ABZR87_RS18330 0.34 +0.6
478,637 - ABZR87_RS18330 0.34 +0.3
478,637 - ABZR87_RS18330 0.34 -0.4
478,673 - ABZR87_RS18330 0.36 +0.5
478,711 + ABZR87_RS18330 0.38 -1.3
478,712 - ABZR87_RS18330 0.38 +0.7
478,712 - ABZR87_RS18330 0.38 +0.1

Or see this region's nucleotide sequence