Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18030 and ABZR87_RS18035 are separated by 14 nucleotides ABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides ABZR87_RS18040 and ABZR87_RS18045 are separated by 68 nucleotides
ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756
_RS18030
ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553
_RS18035
ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323
_RS18040
ABZR87_RS18045: ABZR87_RS18045 - MBL fold metallo-hydrolase, at 405,392 to 406,483
_RS18045
Position (kb) 404
405
406 Strain fitness (log2 ratio) -1
0
1
2
3 at 403.565 kb on + strand, within ABZR87_RS18030 at 403.566 kb on - strand at 403.705 kb on - strand at 403.923 kb on + strand, within ABZR87_RS18035 at 404.233 kb on + strand, within ABZR87_RS18035 at 404.285 kb on + strand, within ABZR87_RS18035 at 404.286 kb on - strand, within ABZR87_RS18035 at 404.548 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.596 kb on + strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.790 kb on + strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.805 kb on - strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 404.973 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.015 kb on + strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.016 kb on - strand, within ABZR87_RS18040 at 405.018 kb on + strand, within ABZR87_RS18040 at 405.019 kb on - strand, within ABZR87_RS18040 at 405.183 kb on + strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.184 kb on - strand, within ABZR87_RS18040 at 405.257 kb on + strand at 405.257 kb on + strand at 405.708 kb on + strand, within ABZR87_RS18045 at 405.781 kb on - strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.092 kb on + strand, within ABZR87_RS18045 at 406.093 kb on - strand, within ABZR87_RS18045
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 403,565 + ABZR87_RS18030 0.90 +1.4 403,566 - +2.7 403,705 - +0.4 403,923 + ABZR87_RS18035 0.19 +0.3 404,233 + ABZR87_RS18035 0.59 +0.4 404,285 + ABZR87_RS18035 0.66 +0.1 404,286 - ABZR87_RS18035 0.66 +1.4 404,548 + +0.3 404,591 + +0.9 404,591 + +2.5 404,591 + +1.7 404,591 + +1.5 404,591 + +0.6 404,591 + -1.4 404,592 - +3.4 404,592 - +1.8 404,592 - +2.0 404,592 - +2.3 404,592 - +2.3 404,592 - +2.2 404,592 - +1.6 404,592 - +1.8 404,592 - +2.0 404,592 - +2.7 404,592 - +1.9 404,592 - +3.7 404,595 + +2.9 404,595 + +2.5 404,595 + +2.7 404,595 + +2.3 404,595 + +2.6 404,595 + +3.2 404,595 + +1.6 404,596 + +2.4 404,596 - +2.5 404,596 - +2.0 404,596 - +2.6 404,596 - +3.1 404,596 - +1.9 404,596 - +2.0 404,596 - +1.4 404,596 - +2.2 404,596 - +2.0 404,596 - +3.0 404,596 - +2.5 404,640 + ABZR87_RS18040 0.10 +2.5 404,640 + ABZR87_RS18040 0.10 +3.1 404,640 + ABZR87_RS18040 0.10 +2.3 404,641 - ABZR87_RS18040 0.10 +2.7 404,641 - ABZR87_RS18040 0.10 +2.5 404,641 - ABZR87_RS18040 0.10 +2.9 404,641 - ABZR87_RS18040 0.10 +3.1 404,641 - ABZR87_RS18040 0.10 +1.5 404,790 + ABZR87_RS18040 0.30 +2.3 404,805 - ABZR87_RS18040 0.32 +2.5 404,805 - ABZR87_RS18040 0.32 +2.5 404,973 + ABZR87_RS18040 0.54 +2.8 404,973 + ABZR87_RS18040 0.54 +2.5 405,015 + ABZR87_RS18040 0.59 +1.9 405,015 + ABZR87_RS18040 0.59 +2.3 405,015 + ABZR87_RS18040 0.59 +1.7 405,016 - ABZR87_RS18040 0.60 +2.6 405,016 - ABZR87_RS18040 0.60 +2.1 405,016 - ABZR87_RS18040 0.60 +2.5 405,018 + ABZR87_RS18040 0.60 +1.6 405,019 - ABZR87_RS18040 0.60 +2.7 405,183 + ABZR87_RS18040 0.81 +3.2 405,184 - ABZR87_RS18040 0.82 +2.1 405,184 - ABZR87_RS18040 0.82 +2.0 405,257 + +1.9 405,257 + +3.0 405,708 + ABZR87_RS18045 0.29 -0.2 405,781 - ABZR87_RS18045 0.36 +1.4 406,092 + ABZR87_RS18045 0.64 +1.6 406,092 + ABZR87_RS18045 0.64 -1.0 406,093 - ABZR87_RS18045 0.64 -0.2
Or see this region's nucleotide sequence