Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09980

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09975 and ABZR87_RS09980 are separated by 74 nucleotidesABZR87_RS09980 and ABZR87_RS09985 are separated by 71 nucleotidesABZR87_RS09985 and ABZR87_RS09990 are separated by 26 nucleotidesABZR87_RS09990 and ABZR87_RS09995 are separated by 10 nucleotides ABZR87_RS09975: ABZR87_RS09975 - Fe-S cluster assembly transcriptional regulator IscR, at 2,121,123 to 2,121,716 _RS09975 ABZR87_RS09980: ABZR87_RS09980 - IscS subfamily cysteine desulfurase, at 2,121,791 to 2,123,008 _RS09980 ABZR87_RS09985: ABZR87_RS09985 - Fe-S cluster assembly scaffold IscU, at 2,123,080 to 2,123,481 _RS09985 ABZR87_RS09990: ABZR87_RS09990 - iron-sulfur cluster assembly protein IscA, at 2,123,508 to 2,123,828 _RS09990 ABZR87_RS09995: ABZR87_RS09995 - DUF3565 domain-containing protein, at 2,123,839 to 2,124,039 _RS09995 Position (kb) 2121 2122 2123 2124Strain fitness (log2 ratio) -2 -1 0 1at 2120.875 kb on + strandat 2120.876 kb on - strandat 2120.981 kb on + strandat 2120.981 kb on + strandat 2121.058 kb on + strandat 2121.059 kb on - strandat 2121.059 kb on - strandat 2121.086 kb on - strandat 2121.087 kb on + strandat 2121.243 kb on + strand, within ABZR87_RS09975at 2121.443 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.501 kb on + strand, within ABZR87_RS09975at 2121.714 kb on + strandat 2121.714 kb on + strandat 2121.714 kb on + strandat 2121.776 kb on + strandat 2121.776 kb on + strandat 2121.790 kb on + strandat 2123.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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2,120,875 + +1.2
2,120,876 - -0.5
2,120,981 + -0.8
2,120,981 + -1.1
2,121,058 + -0.5
2,121,059 - -0.7
2,121,059 - -1.4
2,121,086 - -0.4
2,121,087 + -0.3
2,121,243 + ABZR87_RS09975 0.20 -1.3
2,121,443 + ABZR87_RS09975 0.54 -2.0
2,121,501 + ABZR87_RS09975 0.64 -0.6
2,121,501 + ABZR87_RS09975 0.64 -0.6
2,121,501 + ABZR87_RS09975 0.64 -1.2
2,121,714 + -1.1
2,121,714 + +0.3
2,121,714 + +0.9
2,121,776 + -0.6
2,121,776 + +1.0
2,121,790 + +0.4
2,123,036 + -0.5

Or see this region's nucleotide sequence