Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08605 and ABZR87_RS08610 are separated by 97 nucleotides ABZR87_RS08610 and ABZR87_RS08615 overlap by 8 nucleotides ABZR87_RS08615 and ABZR87_RS08620 overlap by 4 nucleotides ABZR87_RS08620 and ABZR87_RS08625 are separated by 65 nucleotides
ABZR87_RS08605: ABZR87_RS08605 - pseudouridine synthase, at 1,831,073 to 1,831,819
_RS08605
ABZR87_RS08610: ABZR87_RS08610 - YqgE/AlgH family protein, at 1,831,917 to 1,832,489
_RS08610
ABZR87_RS08615: ABZR87_RS08615 - Holliday junction resolvase RuvX, at 1,832,482 to 1,832,913
_RS08615
ABZR87_RS08620: ABZR87_RS08620 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 1,832,910 to 1,833,428
_RS08620
ABZR87_RS08625: ABZR87_RS08625 - aspartate carbamoyltransferase catalytic subunit, at 1,833,494 to 1,834,465
_RS08625
Position (kb) 1832
1833 Strain fitness (log2 ratio) -2
-1
0
1 at 1831.487 kb on + strand, within ABZR87_RS08605 at 1831.487 kb on + strand, within ABZR87_RS08605 at 1831.487 kb on + strand, within ABZR87_RS08605 at 1831.487 kb on + strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.488 kb on - strand, within ABZR87_RS08605 at 1831.600 kb on - strand, within ABZR87_RS08605 at 1831.640 kb on + strand, within ABZR87_RS08605 at 1831.640 kb on + strand, within ABZR87_RS08605 at 1831.640 kb on + strand, within ABZR87_RS08605 at 1831.640 kb on + strand, within ABZR87_RS08605 at 1831.641 kb on - strand, within ABZR87_RS08605 at 1831.641 kb on - strand, within ABZR87_RS08605 at 1831.641 kb on - strand, within ABZR87_RS08605 at 1831.641 kb on - strand, within ABZR87_RS08605 at 1831.641 kb on - strand, within ABZR87_RS08605 at 1831.916 kb on + strand at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.010 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.145 kb on + strand, within ABZR87_RS08610 at 1832.202 kb on + strand, within ABZR87_RS08610 at 1832.450 kb on + strand at 1832.943 kb on + strand at 1832.943 kb on + strand at 1832.944 kb on - strand at 1833.070 kb on - strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.105 kb on + strand, within ABZR87_RS08620 at 1833.318 kb on + strand, within ABZR87_RS08620 at 1833.466 kb on + strand at 1833.467 kb on - strand at 1833.542 kb on - strand at 1833.542 kb on - strand at 1833.801 kb on + strand, within ABZR87_RS08625 at 1833.878 kb on + strand, within ABZR87_RS08625 at 1833.879 kb on - strand, within ABZR87_RS08625
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 1,831,487 + ABZR87_RS08605 0.55 -0.6 1,831,487 + ABZR87_RS08605 0.55 -1.2 1,831,487 + ABZR87_RS08605 0.55 +0.1 1,831,487 + ABZR87_RS08605 0.55 -0.1 1,831,488 - ABZR87_RS08605 0.56 -1.3 1,831,488 - ABZR87_RS08605 0.56 +1.0 1,831,488 - ABZR87_RS08605 0.56 -0.7 1,831,488 - ABZR87_RS08605 0.56 -0.1 1,831,488 - ABZR87_RS08605 0.56 -1.5 1,831,488 - ABZR87_RS08605 0.56 -0.2 1,831,600 - ABZR87_RS08605 0.71 +0.2 1,831,640 + ABZR87_RS08605 0.76 -0.5 1,831,640 + ABZR87_RS08605 0.76 -0.3 1,831,640 + ABZR87_RS08605 0.76 -1.8 1,831,640 + ABZR87_RS08605 0.76 +0.1 1,831,641 - ABZR87_RS08605 0.76 -0.6 1,831,641 - ABZR87_RS08605 0.76 -0.5 1,831,641 - ABZR87_RS08605 0.76 -0.2 1,831,641 - ABZR87_RS08605 0.76 -0.7 1,831,641 - ABZR87_RS08605 0.76 -0.7 1,831,916 + +0.6 1,832,010 + ABZR87_RS08610 0.16 -0.6 1,832,010 + ABZR87_RS08610 0.16 -1.2 1,832,010 + ABZR87_RS08610 0.16 -1.3 1,832,010 + ABZR87_RS08610 0.16 -0.7 1,832,145 + ABZR87_RS08610 0.40 -0.3 1,832,145 + ABZR87_RS08610 0.40 -1.1 1,832,145 + ABZR87_RS08610 0.40 -0.7 1,832,202 + ABZR87_RS08610 0.50 -2.3 1,832,450 + -1.7 1,832,943 + +1.0 1,832,943 + +0.3 1,832,944 - -0.5 1,833,070 - ABZR87_RS08620 0.31 -1.3 1,833,105 + ABZR87_RS08620 0.38 +0.3 1,833,105 + ABZR87_RS08620 0.38 +0.1 1,833,105 + ABZR87_RS08620 0.38 -0.4 1,833,318 + ABZR87_RS08620 0.79 -1.4 1,833,466 + -0.4 1,833,467 - -1.1 1,833,542 - -0.1 1,833,542 - -1.9 1,833,801 + ABZR87_RS08625 0.32 +1.3 1,833,878 + ABZR87_RS08625 0.40 +0.8 1,833,879 - ABZR87_RS08625 0.40 -1.2
Or see this region's nucleotide sequence