Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06935

Experiment: rhizosphere sample 5; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 5; outgrowth in LB
1,465,943	+				-0.2
1,465,956	+				-1.6
1,465,956	+				-0.6
1,465,957	-				-1.7
1,465,968	+				+0.4
1,465,968	+				-0.6
1,465,968	+				+0.2
1,465,968	+				-0.5
1,465,968	+				+0.1
1,465,969	-				-0.5
1,465,969	-				+0.6
1,465,969	-				-0.1
1,465,969	-				+1.1
1,465,969	-				-0.6
1,465,969	-				+0.4
1,465,983	+				+0.1
1,465,984	-				-0.1
1,465,990	+				+2.4
1,465,991	-				-0.5
1,466,004	+				+1.1
1,466,080	+				-1.2
1,466,080	+				-1.8
1,466,080	+				-0.5
1,466,080	+				-0.2
1,466,081	-				-0.1
1,466,148	+				-0.3
1,466,228	+				-0.2
1,466,229	-				+0.5
1,466,229	-				+0.4
1,466,229	-				-0.6
1,466,299	+				-0.6
1,466,321	+				-0.1
1,466,322	-				-1.0
1,466,322	-				+2.8
1,466,331	+				+1.8
1,466,331	+				+0.3
1,466,331	+				-0.8
1,466,332	-				+0.5
1,466,387	-				-0.1
1,466,401	+				-2.0
1,466,401	+				+0.6
1,466,401	+				+0.5
1,466,401	+				+0.5
1,466,402	-				-0.5
1,466,402	-				+0.2
1,466,402	-				-0.4
1,466,402	-				+0.3
1,466,402	-				+0.5
1,466,443	+				-0.1
1,466,443	+				-0.2
1,466,495	+				+0.8
1,466,496	-				-0.4
1,466,505	+				+0.9
1,466,505	+				+0.1
1,466,505	+				+0.2
1,466,505	+				-0.2
1,466,506	-				+1.1
1,466,581	+		ABZR87_RS06930	0.20	+0.6
1,466,581	+		ABZR87_RS06930	0.20	+0.5
1,466,581	+		ABZR87_RS06930	0.20	+0.7
1,466,581	+		ABZR87_RS06930	0.20	+1.7
1,466,582	-		ABZR87_RS06930	0.20	+0.6
1,466,582	-		ABZR87_RS06930	0.20	+0.0
1,466,582	-		ABZR87_RS06930	0.20	-0.5
1,466,607	-		ABZR87_RS06930	0.26	+1.0
1,466,668	+		ABZR87_RS06930	0.40	+0.1
1,466,668	+		ABZR87_RS06930	0.40	-0.0
1,466,669	-		ABZR87_RS06930	0.40	+0.0
1,466,669	-		ABZR87_RS06930	0.40	+0.1
1,466,669	-		ABZR87_RS06930	0.40	+1.0
1,466,669	-		ABZR87_RS06930	0.40	-0.7
1,466,751	-		ABZR87_RS06930	0.59	+0.3
1,466,751	-		ABZR87_RS06930	0.59	-0.9
1,466,767	+		ABZR87_RS06930	0.63	-0.2
1,466,768	-		ABZR87_RS06930	0.63	-0.2
1,466,768	-		ABZR87_RS06930	0.63	-0.3
1,466,791	+		ABZR87_RS06930	0.68	+0.1
1,466,792	-		ABZR87_RS06930	0.69	+0.2
1,466,792	-		ABZR87_RS06930	0.69	+2.9
1,466,806	+		ABZR87_RS06930	0.72	+0.4
1,466,864	+		ABZR87_RS06930	0.85	+0.4
1,466,864	+		ABZR87_RS06930	0.85	+1.1
1,466,864	+		ABZR87_RS06930	0.85	+0.4
1,466,865	-		ABZR87_RS06930	0.85	+1.1
1,466,865	-		ABZR87_RS06930	0.85	-0.4
1,466,865	-		ABZR87_RS06930	0.85	-0.5
1,466,865	-		ABZR87_RS06930	0.85	+0.7
1,466,865	-		ABZR87_RS06930	0.85	-0.2
1,466,904	+				-0.3
1,466,904	+				+0.7
1,466,919	+				-0.3
1,466,919	+				-1.2
1,466,920	-				+0.7
1,466,920	-				-0.9
1,466,920	-				+0.4
1,466,920	-				+1.0
1,466,941	+				+0.3
1,466,942	-				-0.3
1,467,007	-				-0.8
1,467,007	-				-0.6
1,467,007	-				+0.4
1,467,047	+		ABZR87_RS06935	0.14	-0.6
1,467,047	+		ABZR87_RS06935	0.14	+0.0
1,467,056	+		ABZR87_RS06935	0.15	-0.8
1,467,056	+		ABZR87_RS06935	0.15	+0.8
1,467,056	+		ABZR87_RS06935	0.15	+1.5
1,467,057	-		ABZR87_RS06935	0.15	-0.2
1,467,057	-		ABZR87_RS06935	0.15	+0.9
1,467,057	-		ABZR87_RS06935	0.15	-1.3
1,467,057	-		ABZR87_RS06935	0.15	+0.9
1,467,057	-		ABZR87_RS06935	0.15	+0.2
1,467,059	+		ABZR87_RS06935	0.15	-1.5
1,467,059	+		ABZR87_RS06935	0.15	-0.2
1,467,064	+		ABZR87_RS06935	0.16	+0.5
1,467,064	+		ABZR87_RS06935	0.16	-1.2
1,467,064	+		ABZR87_RS06935	0.16	-0.1
1,467,064	+		ABZR87_RS06935	0.16	-0.9
1,467,064	+		ABZR87_RS06935	0.16	-0.3
1,467,064	+		ABZR87_RS06935	0.16	+0.1
1,467,064	+		ABZR87_RS06935	0.16	-0.0
1,467,065	-		ABZR87_RS06935	0.16	-0.6
1,467,065	-		ABZR87_RS06935	0.16	+2.7
1,467,065	-		ABZR87_RS06935	0.16	+0.6
1,467,065	-		ABZR87_RS06935	0.16	-0.2
1,467,065	-		ABZR87_RS06935	0.16	+0.6
1,467,068	+		ABZR87_RS06935	0.16	-0.0
1,467,069	-		ABZR87_RS06935	0.16	+0.5
1,467,069	-		ABZR87_RS06935	0.16	-1.2
1,467,087	+		ABZR87_RS06935	0.18	+0.5
1,467,101	+		ABZR87_RS06935	0.19	-0.1
1,467,102	-		ABZR87_RS06935	0.19	-0.1
1,467,133	+		ABZR87_RS06935	0.23	-1.1
1,467,134	-		ABZR87_RS06935	0.23	-0.1
1,467,134	-		ABZR87_RS06935	0.23	+0.2
1,467,158	+		ABZR87_RS06935	0.25	-0.0
1,467,158	+		ABZR87_RS06935	0.25	-0.1
1,467,159	-		ABZR87_RS06935	0.25	+1.5
1,467,159	-		ABZR87_RS06935	0.25	+0.3
1,467,159	-		ABZR87_RS06935	0.25	-0.2
1,467,159	-		ABZR87_RS06935	0.25	-0.5
1,467,159	-		ABZR87_RS06935	0.25	-0.2
1,467,232	-		ABZR87_RS06935	0.33	+1.0
1,467,254	+		ABZR87_RS06935	0.35	+0.3
1,467,266	+		ABZR87_RS06935	0.36	+1.2
1,467,266	+		ABZR87_RS06935	0.36	-0.9
1,467,267	-		ABZR87_RS06935	0.36	+0.4
1,467,267	-		ABZR87_RS06935	0.36	-0.7
1,467,267	-		ABZR87_RS06935	0.36	+0.8
1,467,267	-		ABZR87_RS06935	0.36	+0.4
1,467,268	+		ABZR87_RS06935	0.36	+0.1
1,467,268	+		ABZR87_RS06935	0.36	-1.4
1,467,268	+		ABZR87_RS06935	0.36	+0.2
1,467,268	+		ABZR87_RS06935	0.36	-1.1
1,467,276	-		ABZR87_RS06935	0.37	-0.4
1,467,276	-		ABZR87_RS06935	0.37	-0.8
1,467,300	+		ABZR87_RS06935	0.39	-0.0
1,467,301	-		ABZR87_RS06935	0.39	+3.1
1,467,311	+		ABZR87_RS06935	0.40	+0.4
1,467,322	+		ABZR87_RS06935	0.42	+1.7
1,467,362	-		ABZR87_RS06935	0.46	-0.8
1,467,375	-		ABZR87_RS06935	0.47	+1.1
1,467,392	-		ABZR87_RS06935	0.49	-0.7
1,467,545	-		ABZR87_RS06935	0.64	-0.2
1,467,545	-		ABZR87_RS06935	0.64	-0.4
1,467,635	-		ABZR87_RS06935	0.73	+0.2
1,467,736	-		ABZR87_RS06935	0.83	+0.8
1,467,736	-		ABZR87_RS06935	0.83	+0.0
1,467,736	-		ABZR87_RS06935	0.83	-0.3
1,467,753	+		ABZR87_RS06935	0.85	-0.4
1,467,753	+		ABZR87_RS06935	0.85	+0.3
1,467,754	-		ABZR87_RS06935	0.85	+1.2
1,467,754	-		ABZR87_RS06935	0.85	+0.0
1,467,754	-		ABZR87_RS06935	0.85	+0.7
1,467,843	-				-0.9
1,467,843	-				+0.4
1,467,843	-				-0.5
1,467,843	-				-0.4
1,467,859	+				-0.4
1,467,859	+				+0.2
1,467,859	+				+0.9
1,467,859	+				-0.5
1,467,863	+				-1.3
1,467,864	-				+0.4
1,467,864	-				-0.2
1,467,864	-				+1.1
1,467,864	-				+1.7
1,467,864	-				-0.9
1,467,864	-				+0.2
1,467,864	-				-0.7
1,467,877	+				-0.0
1,467,947	+				+0.3
1,467,948	-				-0.6
1,467,948	-				-1.3
1,468,000	+		ABZR87_RS06940	0.24	-3.2
1,468,107	+		ABZR87_RS06940	0.54	+0.8
1,468,133	+		ABZR87_RS06940	0.61	+0.6
1,468,134	-		ABZR87_RS06940	0.61	-1.1
1,468,134	-		ABZR87_RS06940	0.61	-0.6
1,468,134	-		ABZR87_RS06940	0.61	-0.4
1,468,134	-		ABZR87_RS06940	0.61	+0.9
1,468,174	-		ABZR87_RS06940	0.72	+0.2
1,468,247	+				-0.8
1,468,247	+				+1.1
1,468,248	-				+0.4
1,468,366	-				-1.9
1,468,375	+				+0.2
1,468,375	+				+0.2
1,468,376	-				-0.3
1,468,380	+				-1.1
1,468,381	-				+0.2
1,468,381	-				-0.9
1,468,381	-				+0.2
1,468,404	+				-0.1
1,468,405	-				+0.4
1,468,418	+				+0.4
1,468,438	+				+0.5
1,468,438	+				+0.4
1,468,439	-				-0.4
1,468,439	-				+0.0
1,468,470	+				+1.0
1,468,470	+				-0.2