Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06105

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06095 and ABZR87_RS06100 are separated by 4 nucleotidesABZR87_RS06100 and ABZR87_RS06105 are separated by 4 nucleotidesABZR87_RS06105 and ABZR87_RS06110 are separated by 57 nucleotidesABZR87_RS06110 and ABZR87_RS06115 are separated by 111 nucleotides ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341 _RS06095 ABZR87_RS06100: ABZR87_RS06100 - DoxX family protein, at 1,303,346 to 1,303,777 _RS06100 ABZR87_RS06105: ABZR87_RS06105 - XapX domain-containing protein, at 1,303,782 to 1,304,102 _RS06105 ABZR87_RS06110: ABZR87_RS06110 - alpha/beta hydrolase, at 1,304,160 to 1,304,981 _RS06110 ABZR87_RS06115: ABZR87_RS06115 - hydrolase, at 1,305,093 to 1,305,776 _RS06115 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.861 kb on - strand, within ABZR87_RS06095at 1302.861 kb on - strand, within ABZR87_RS06095at 1303.350 kb on + strandat 1303.629 kb on + strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1303.630 kb on - strand, within ABZR87_RS06100at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.050 kb on + strand, within ABZR87_RS06105at 1304.051 kb on + strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.051 kb on - strand, within ABZR87_RS06105at 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.092 kb on + strandat 1304.093 kb on - strandat 1304.368 kb on + strand, within ABZR87_RS06110at 1304.368 kb on + strand, within ABZR87_RS06110at 1304.401 kb on + strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.402 kb on - strand, within ABZR87_RS06110at 1304.515 kb on + strand, within ABZR87_RS06110at 1304.515 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.671 kb on + strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.672 kb on - strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.764 kb on + strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.765 kb on - strand, within ABZR87_RS06110at 1304.941 kb on + strandat 1304.942 kb on - strandat 1304.942 kb on - strandat 1304.954 kb on + strandat 1304.955 kb on - strandat 1304.955 kb on - strandat 1304.969 kb on + strandat 1304.969 kb on + strandat 1304.970 kb on - strandat 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.076 kb on + strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.077 kb on - strandat 1305.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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1,302,861 - ABZR87_RS06095 0.74 +1.2
1,302,861 - ABZR87_RS06095 0.74 -0.1
1,303,350 + +0.1
1,303,629 + ABZR87_RS06100 0.66 +0.7
1,303,630 - ABZR87_RS06100 0.66 -0.4
1,303,630 - ABZR87_RS06100 0.66 -0.8
1,303,630 - ABZR87_RS06100 0.66 -0.3
1,303,630 - ABZR87_RS06100 0.66 -0.2
1,304,050 + ABZR87_RS06105 0.83 -0.8
1,304,050 + ABZR87_RS06105 0.83 +0.9
1,304,050 + ABZR87_RS06105 0.83 +0.9
1,304,050 + ABZR87_RS06105 0.83 +0.3
1,304,050 + ABZR87_RS06105 0.83 +0.5
1,304,050 + ABZR87_RS06105 0.83 +0.3
1,304,050 + ABZR87_RS06105 0.83 -0.2
1,304,050 + ABZR87_RS06105 0.83 -0.8
1,304,050 + ABZR87_RS06105 0.83 -0.3
1,304,050 + ABZR87_RS06105 0.83 -0.1
1,304,050 + ABZR87_RS06105 0.83 +0.9
1,304,051 + ABZR87_RS06105 0.84 +1.0
1,304,051 - ABZR87_RS06105 0.84 +0.1
1,304,051 - ABZR87_RS06105 0.84 +0.4
1,304,051 - ABZR87_RS06105 0.84 +1.6
1,304,051 - ABZR87_RS06105 0.84 -0.1
1,304,051 - ABZR87_RS06105 0.84 +0.3
1,304,051 - ABZR87_RS06105 0.84 +0.1
1,304,051 - ABZR87_RS06105 0.84 +1.9
1,304,051 - ABZR87_RS06105 0.84 +0.8
1,304,051 - ABZR87_RS06105 0.84 +0.7
1,304,051 - ABZR87_RS06105 0.84 -0.0
1,304,051 - ABZR87_RS06105 0.84 -1.1
1,304,051 - ABZR87_RS06105 0.84 +0.7
1,304,092 + -0.0
1,304,092 + +0.3
1,304,092 + +1.5
1,304,092 + +0.1
1,304,093 - +1.0
1,304,368 + ABZR87_RS06110 0.25 +0.6
1,304,368 + ABZR87_RS06110 0.25 +1.0
1,304,401 + ABZR87_RS06110 0.29 -0.3
1,304,402 - ABZR87_RS06110 0.29 +0.0
1,304,402 - ABZR87_RS06110 0.29 +0.1
1,304,402 - ABZR87_RS06110 0.29 -0.6
1,304,515 + ABZR87_RS06110 0.43 -0.0
1,304,515 + ABZR87_RS06110 0.43 +0.2
1,304,671 + ABZR87_RS06110 0.62 +0.2
1,304,671 + ABZR87_RS06110 0.62 +0.2
1,304,671 + ABZR87_RS06110 0.62 -1.4
1,304,671 + ABZR87_RS06110 0.62 +1.8
1,304,672 - ABZR87_RS06110 0.62 +0.5
1,304,672 - ABZR87_RS06110 0.62 +0.1
1,304,672 - ABZR87_RS06110 0.62 -1.7
1,304,672 - ABZR87_RS06110 0.62 -1.8
1,304,672 - ABZR87_RS06110 0.62 +0.7
1,304,672 - ABZR87_RS06110 0.62 +0.2
1,304,672 - ABZR87_RS06110 0.62 +0.2
1,304,764 + ABZR87_RS06110 0.73 -0.1
1,304,764 + ABZR87_RS06110 0.73 +0.3
1,304,764 + ABZR87_RS06110 0.73 -0.6
1,304,765 - ABZR87_RS06110 0.74 +0.1
1,304,765 - ABZR87_RS06110 0.74 +0.0
1,304,765 - ABZR87_RS06110 0.74 -0.9
1,304,765 - ABZR87_RS06110 0.74 -0.4
1,304,941 + -1.6
1,304,942 - -0.9
1,304,942 - +0.0
1,304,954 + +1.4
1,304,955 - -0.2
1,304,955 - +0.5
1,304,969 + -0.2
1,304,969 + -0.4
1,304,970 - +0.7
1,305,076 + -0.5
1,305,076 + +0.4
1,305,076 + +0.2
1,305,076 + -1.0
1,305,077 - -0.4
1,305,077 - -0.6
1,305,077 - -0.8
1,305,077 - +0.6
1,305,077 - -0.5
1,305,079 - +0.5

Or see this region's nucleotide sequence