Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05540

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05535 and ABZR87_RS05540 are separated by 233 nucleotidesABZR87_RS05540 and ABZR87_RS05545 are separated by 12 nucleotides ABZR87_RS05535: ABZR87_RS05535 - HPP family protein, at 1,176,277 to 1,177,425 _RS05535 ABZR87_RS05540: ABZR87_RS05540 - phosphatase PAP2 family protein, at 1,177,659 to 1,179,647 _RS05540 ABZR87_RS05545: ABZR87_RS05545 - AraC family transcriptional regulator, at 1,179,660 to 1,180,499 _RS05545 Position (kb) 1177 1178 1179 1180Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1176.731 kb on + strand, within ABZR87_RS05535at 1176.732 kb on - strand, within ABZR87_RS05535at 1176.732 kb on - strand, within ABZR87_RS05535at 1176.914 kb on + strand, within ABZR87_RS05535at 1176.914 kb on + strand, within ABZR87_RS05535at 1176.914 kb on + strand, within ABZR87_RS05535at 1176.915 kb on - strand, within ABZR87_RS05535at 1176.915 kb on - strand, within ABZR87_RS05535at 1177.489 kb on + strandat 1177.489 kb on + strandat 1177.490 kb on - strandat 1177.490 kb on - strandat 1177.491 kb on + strandat 1177.491 kb on + strandat 1177.492 kb on - strandat 1177.507 kb on - strandat 1177.507 kb on - strandat 1177.507 kb on - strandat 1177.507 kb on - strandat 1177.548 kb on + strandat 1177.548 kb on + strandat 1177.590 kb on + strandat 1177.590 kb on + strandat 1177.590 kb on + strandat 1177.590 kb on + strandat 1177.591 kb on - strandat 1178.090 kb on - strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.121 kb on + strand, within ABZR87_RS05540at 1178.122 kb on - strand, within ABZR87_RS05540at 1178.122 kb on - strand, within ABZR87_RS05540at 1178.122 kb on - strand, within ABZR87_RS05540at 1178.122 kb on - strand, within ABZR87_RS05540at 1178.122 kb on - strand, within ABZR87_RS05540at 1178.172 kb on + strand, within ABZR87_RS05540at 1178.172 kb on + strand, within ABZR87_RS05540at 1178.173 kb on - strand, within ABZR87_RS05540at 1178.270 kb on + strand, within ABZR87_RS05540at 1178.271 kb on - strand, within ABZR87_RS05540at 1178.271 kb on - strand, within ABZR87_RS05540at 1178.271 kb on - strand, within ABZR87_RS05540at 1178.304 kb on + strand, within ABZR87_RS05540at 1178.304 kb on + strand, within ABZR87_RS05540at 1178.304 kb on + strand, within ABZR87_RS05540at 1178.304 kb on + strand, within ABZR87_RS05540at 1178.304 kb on + strand, within ABZR87_RS05540at 1178.305 kb on - strand, within ABZR87_RS05540at 1178.305 kb on - strand, within ABZR87_RS05540at 1178.305 kb on - strand, within ABZR87_RS05540at 1178.305 kb on - strand, within ABZR87_RS05540at 1178.406 kb on - strand, within ABZR87_RS05540at 1178.406 kb on - strand, within ABZR87_RS05540at 1178.406 kb on - strand, within ABZR87_RS05540at 1178.427 kb on + strand, within ABZR87_RS05540at 1178.428 kb on - strand, within ABZR87_RS05540at 1178.428 kb on - strand, within ABZR87_RS05540at 1178.428 kb on - strand, within ABZR87_RS05540at 1178.428 kb on - strand, within ABZR87_RS05540at 1178.433 kb on + strand, within ABZR87_RS05540at 1178.433 kb on + strand, within ABZR87_RS05540at 1178.433 kb on + strand, within ABZR87_RS05540at 1178.433 kb on + strand, within ABZR87_RS05540at 1178.433 kb on + strand, within ABZR87_RS05540at 1178.434 kb on - strand, within ABZR87_RS05540at 1178.434 kb on - strand, within ABZR87_RS05540at 1178.434 kb on - strand, within ABZR87_RS05540at 1178.434 kb on - strand, within ABZR87_RS05540at 1178.574 kb on + strand, within ABZR87_RS05540at 1178.574 kb on + strand, within ABZR87_RS05540at 1178.574 kb on + strand, within ABZR87_RS05540at 1178.574 kb on + strand, within ABZR87_RS05540at 1178.574 kb on + strand, within ABZR87_RS05540at 1178.575 kb on - strand, within ABZR87_RS05540at 1178.575 kb on - strand, within ABZR87_RS05540at 1178.575 kb on - strand, within ABZR87_RS05540at 1178.575 kb on - strand, within ABZR87_RS05540at 1178.856 kb on + strand, within ABZR87_RS05540at 1178.857 kb on - strand, within ABZR87_RS05540at 1178.857 kb on - strand, within ABZR87_RS05540at 1178.980 kb on - strand, within ABZR87_RS05540at 1178.980 kb on - strand, within ABZR87_RS05540at 1179.099 kb on + strand, within ABZR87_RS05540at 1179.167 kb on + strand, within ABZR87_RS05540at 1179.167 kb on + strand, within ABZR87_RS05540at 1179.168 kb on - strand, within ABZR87_RS05540at 1179.168 kb on - strand, within ABZR87_RS05540at 1179.168 kb on - strand, within ABZR87_RS05540at 1179.249 kb on + strand, within ABZR87_RS05540at 1179.249 kb on + strand, within ABZR87_RS05540at 1179.249 kb on + strand, within ABZR87_RS05540at 1179.249 kb on + strand, within ABZR87_RS05540at 1179.250 kb on - strand, within ABZR87_RS05540at 1179.250 kb on - strand, within ABZR87_RS05540at 1179.250 kb on - strand, within ABZR87_RS05540at 1179.250 kb on - strand, within ABZR87_RS05540at 1179.250 kb on - strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.324 kb on + strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.325 kb on - strand, within ABZR87_RS05540at 1179.508 kb on - strandat 1179.541 kb on + strandat 1179.541 kb on + strandat 1179.541 kb on + strandat 1179.541 kb on + strandat 1179.541 kb on + strandat 1179.542 kb on - strandat 1179.542 kb on - strandat 1179.542 kb on - strandat 1179.542 kb on - strandat 1179.542 kb on - strandat 1179.609 kb on + strandat 1179.715 kb on + strandat 1179.715 kb on + strandat 1179.715 kb on + strandat 1179.787 kb on + strand, within ABZR87_RS05545at 1179.787 kb on + strand, within ABZR87_RS05545at 1179.788 kb on - strand, within ABZR87_RS05545at 1179.788 kb on - strand, within ABZR87_RS05545at 1179.788 kb on - strand, within ABZR87_RS05545at 1179.788 kb on - strand, within ABZR87_RS05545at 1179.788 kb on - strand, within ABZR87_RS05545at 1179.793 kb on + strand, within ABZR87_RS05545at 1179.793 kb on + strand, within ABZR87_RS05545at 1179.793 kb on + strand, within ABZR87_RS05545at 1179.793 kb on + strand, within ABZR87_RS05545at 1179.793 kb on + strand, within ABZR87_RS05545at 1179.794 kb on - strand, within ABZR87_RS05545at 1179.794 kb on - strand, within ABZR87_RS05545at 1179.794 kb on - strand, within ABZR87_RS05545at 1179.794 kb on - strand, within ABZR87_RS05545at 1179.794 kb on - strand, within ABZR87_RS05545at 1179.847 kb on + strand, within ABZR87_RS05545at 1179.848 kb on - strand, within ABZR87_RS05545at 1179.848 kb on - strand, within ABZR87_RS05545at 1179.848 kb on - strand, within ABZR87_RS05545at 1179.967 kb on + strand, within ABZR87_RS05545at 1179.968 kb on - strand, within ABZR87_RS05545at 1179.968 kb on - strand, within ABZR87_RS05545at 1179.979 kb on + strand, within ABZR87_RS05545at 1179.979 kb on + strand, within ABZR87_RS05545at 1179.979 kb on + strand, within ABZR87_RS05545at 1179.979 kb on + strand, within ABZR87_RS05545at 1179.980 kb on - strand, within ABZR87_RS05545at 1179.980 kb on - strand, within ABZR87_RS05545at 1179.980 kb on - strand, within ABZR87_RS05545at 1179.980 kb on - strand, within ABZR87_RS05545at 1179.980 kb on - strand, within ABZR87_RS05545at 1180.176 kb on + strand, within ABZR87_RS05545at 1180.176 kb on + strand, within ABZR87_RS05545at 1180.177 kb on - strand, within ABZR87_RS05545at 1180.177 kb on - strand, within ABZR87_RS05545at 1180.177 kb on - strand, within ABZR87_RS05545at 1180.325 kb on - strand, within ABZR87_RS05545at 1180.369 kb on + strand, within ABZR87_RS05545at 1180.369 kb on + strand, within ABZR87_RS05545at 1180.369 kb on + strand, within ABZR87_RS05545at 1180.369 kb on + strand, within ABZR87_RS05545at 1180.369 kb on + strand, within ABZR87_RS05545at 1180.370 kb on - strand, within ABZR87_RS05545at 1180.370 kb on - strand, within ABZR87_RS05545at 1180.370 kb on - strand, within ABZR87_RS05545at 1180.370 kb on - strand, within ABZR87_RS05545at 1180.370 kb on - strand, within ABZR87_RS05545at 1180.420 kb on + strandat 1180.421 kb on - strandat 1180.520 kb on - strandat 1180.565 kb on - strandat 1180.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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1,176,731 + ABZR87_RS05535 0.40 -0.3
1,176,732 - ABZR87_RS05535 0.40 +1.1
1,176,732 - ABZR87_RS05535 0.40 +0.6
1,176,914 + ABZR87_RS05535 0.55 +0.5
1,176,914 + ABZR87_RS05535 0.55 +0.4
1,176,914 + ABZR87_RS05535 0.55 +0.7
1,176,915 - ABZR87_RS05535 0.56 +0.4
1,176,915 - ABZR87_RS05535 0.56 -0.5
1,177,489 + -0.5
1,177,489 + -0.0
1,177,490 - +0.2
1,177,490 - -2.3
1,177,491 + +0.1
1,177,491 + +0.3
1,177,492 - -0.8
1,177,507 - +0.1
1,177,507 - +0.1
1,177,507 - -1.4
1,177,507 - +0.3
1,177,548 + +1.5
1,177,548 + +0.5
1,177,590 + +0.1
1,177,590 + +0.1
1,177,590 + +0.4
1,177,590 + -0.1
1,177,591 - +0.7
1,178,090 - ABZR87_RS05540 0.22 +0.1
1,178,121 + ABZR87_RS05540 0.23 -1.0
1,178,121 + ABZR87_RS05540 0.23 +0.9
1,178,121 + ABZR87_RS05540 0.23 -0.4
1,178,121 + ABZR87_RS05540 0.23 -0.1
1,178,121 + ABZR87_RS05540 0.23 +0.2
1,178,121 + ABZR87_RS05540 0.23 -0.4
1,178,121 + ABZR87_RS05540 0.23 +0.1
1,178,122 - ABZR87_RS05540 0.23 +0.0
1,178,122 - ABZR87_RS05540 0.23 -1.5
1,178,122 - ABZR87_RS05540 0.23 +0.6
1,178,122 - ABZR87_RS05540 0.23 -0.0
1,178,122 - ABZR87_RS05540 0.23 -2.8
1,178,172 + ABZR87_RS05540 0.26 -0.5
1,178,172 + ABZR87_RS05540 0.26 +2.7
1,178,173 - ABZR87_RS05540 0.26 +0.4
1,178,270 + ABZR87_RS05540 0.31 -1.2
1,178,271 - ABZR87_RS05540 0.31 -0.0
1,178,271 - ABZR87_RS05540 0.31 +0.7
1,178,271 - ABZR87_RS05540 0.31 +0.4
1,178,304 + ABZR87_RS05540 0.32 -0.5
1,178,304 + ABZR87_RS05540 0.32 -0.5
1,178,304 + ABZR87_RS05540 0.32 -0.9
1,178,304 + ABZR87_RS05540 0.32 +0.6
1,178,304 + ABZR87_RS05540 0.32 +0.2
1,178,305 - ABZR87_RS05540 0.32 +0.6
1,178,305 - ABZR87_RS05540 0.32 -2.0
1,178,305 - ABZR87_RS05540 0.32 -0.5
1,178,305 - ABZR87_RS05540 0.32 -0.8
1,178,406 - ABZR87_RS05540 0.38 +0.2
1,178,406 - ABZR87_RS05540 0.38 +0.2
1,178,406 - ABZR87_RS05540 0.38 -0.0
1,178,427 + ABZR87_RS05540 0.39 +0.2
1,178,428 - ABZR87_RS05540 0.39 +0.6
1,178,428 - ABZR87_RS05540 0.39 -0.3
1,178,428 - ABZR87_RS05540 0.39 +0.1
1,178,428 - ABZR87_RS05540 0.39 -0.5
1,178,433 + ABZR87_RS05540 0.39 -0.3
1,178,433 + ABZR87_RS05540 0.39 +1.1
1,178,433 + ABZR87_RS05540 0.39 -0.2
1,178,433 + ABZR87_RS05540 0.39 -0.7
1,178,433 + ABZR87_RS05540 0.39 -0.6
1,178,434 - ABZR87_RS05540 0.39 +1.7
1,178,434 - ABZR87_RS05540 0.39 -0.9
1,178,434 - ABZR87_RS05540 0.39 +0.9
1,178,434 - ABZR87_RS05540 0.39 -0.2
1,178,574 + ABZR87_RS05540 0.46 -1.2
1,178,574 + ABZR87_RS05540 0.46 -0.0
1,178,574 + ABZR87_RS05540 0.46 +0.6
1,178,574 + ABZR87_RS05540 0.46 -1.1
1,178,574 + ABZR87_RS05540 0.46 -0.1
1,178,575 - ABZR87_RS05540 0.46 -1.5
1,178,575 - ABZR87_RS05540 0.46 -0.0
1,178,575 - ABZR87_RS05540 0.46 -0.2
1,178,575 - ABZR87_RS05540 0.46 +1.3
1,178,856 + ABZR87_RS05540 0.60 -0.1
1,178,857 - ABZR87_RS05540 0.60 +0.0
1,178,857 - ABZR87_RS05540 0.60 -1.1
1,178,980 - ABZR87_RS05540 0.66 -0.1
1,178,980 - ABZR87_RS05540 0.66 +0.0
1,179,099 + ABZR87_RS05540 0.72 -0.9
1,179,167 + ABZR87_RS05540 0.76 -1.3
1,179,167 + ABZR87_RS05540 0.76 +0.5
1,179,168 - ABZR87_RS05540 0.76 -0.2
1,179,168 - ABZR87_RS05540 0.76 -0.0
1,179,168 - ABZR87_RS05540 0.76 -0.2
1,179,249 + ABZR87_RS05540 0.80 -0.8
1,179,249 + ABZR87_RS05540 0.80 +2.7
1,179,249 + ABZR87_RS05540 0.80 -0.6
1,179,249 + ABZR87_RS05540 0.80 +0.1
1,179,250 - ABZR87_RS05540 0.80 +0.1
1,179,250 - ABZR87_RS05540 0.80 -1.3
1,179,250 - ABZR87_RS05540 0.80 -1.0
1,179,250 - ABZR87_RS05540 0.80 +0.3
1,179,250 - ABZR87_RS05540 0.80 +0.7
1,179,324 + ABZR87_RS05540 0.84 -1.3
1,179,324 + ABZR87_RS05540 0.84 +0.2
1,179,324 + ABZR87_RS05540 0.84 +0.2
1,179,324 + ABZR87_RS05540 0.84 -0.4
1,179,324 + ABZR87_RS05540 0.84 -0.3
1,179,324 + ABZR87_RS05540 0.84 -1.3
1,179,324 + ABZR87_RS05540 0.84 -0.5
1,179,324 + ABZR87_RS05540 0.84 -0.3
1,179,324 + ABZR87_RS05540 0.84 +0.3
1,179,325 - ABZR87_RS05540 0.84 -0.5
1,179,325 - ABZR87_RS05540 0.84 -0.9
1,179,325 - ABZR87_RS05540 0.84 +0.9
1,179,325 - ABZR87_RS05540 0.84 +0.0
1,179,325 - ABZR87_RS05540 0.84 -1.0
1,179,325 - ABZR87_RS05540 0.84 +0.9
1,179,325 - ABZR87_RS05540 0.84 -0.5
1,179,508 - -0.5
1,179,541 + +0.5
1,179,541 + +0.4
1,179,541 + +0.8
1,179,541 + +0.3
1,179,541 + -0.3
1,179,542 - -1.2
1,179,542 - -2.7
1,179,542 - -0.6
1,179,542 - -0.6
1,179,542 - +1.1
1,179,609 + +0.5
1,179,715 + -0.4
1,179,715 + -0.7
1,179,715 + +0.8
1,179,787 + ABZR87_RS05545 0.15 +0.6
1,179,787 + ABZR87_RS05545 0.15 -1.7
1,179,788 - ABZR87_RS05545 0.15 +0.2
1,179,788 - ABZR87_RS05545 0.15 +0.5
1,179,788 - ABZR87_RS05545 0.15 -0.4
1,179,788 - ABZR87_RS05545 0.15 -0.1
1,179,788 - ABZR87_RS05545 0.15 +0.4
1,179,793 + ABZR87_RS05545 0.16 +0.1
1,179,793 + ABZR87_RS05545 0.16 +0.7
1,179,793 + ABZR87_RS05545 0.16 -0.6
1,179,793 + ABZR87_RS05545 0.16 -0.3
1,179,793 + ABZR87_RS05545 0.16 +0.5
1,179,794 - ABZR87_RS05545 0.16 +2.2
1,179,794 - ABZR87_RS05545 0.16 -0.2
1,179,794 - ABZR87_RS05545 0.16 +0.8
1,179,794 - ABZR87_RS05545 0.16 -0.8
1,179,794 - ABZR87_RS05545 0.16 +1.3
1,179,847 + ABZR87_RS05545 0.22 +0.0
1,179,848 - ABZR87_RS05545 0.22 +1.2
1,179,848 - ABZR87_RS05545 0.22 +0.7
1,179,848 - ABZR87_RS05545 0.22 +0.1
1,179,967 + ABZR87_RS05545 0.37 +0.1
1,179,968 - ABZR87_RS05545 0.37 -2.3
1,179,968 - ABZR87_RS05545 0.37 -0.6
1,179,979 + ABZR87_RS05545 0.38 +0.7
1,179,979 + ABZR87_RS05545 0.38 -1.7
1,179,979 + ABZR87_RS05545 0.38 -0.8
1,179,979 + ABZR87_RS05545 0.38 +3.1
1,179,980 - ABZR87_RS05545 0.38 -0.7
1,179,980 - ABZR87_RS05545 0.38 -0.2
1,179,980 - ABZR87_RS05545 0.38 +0.3
1,179,980 - ABZR87_RS05545 0.38 -1.3
1,179,980 - ABZR87_RS05545 0.38 +0.8
1,180,176 + ABZR87_RS05545 0.61 +0.2
1,180,176 + ABZR87_RS05545 0.61 +0.9
1,180,177 - ABZR87_RS05545 0.62 -1.3
1,180,177 - ABZR87_RS05545 0.62 -0.1
1,180,177 - ABZR87_RS05545 0.62 -0.4
1,180,325 - ABZR87_RS05545 0.79 +3.7
1,180,369 + ABZR87_RS05545 0.84 +1.5
1,180,369 + ABZR87_RS05545 0.84 -0.3
1,180,369 + ABZR87_RS05545 0.84 -0.8
1,180,369 + ABZR87_RS05545 0.84 -0.2
1,180,369 + ABZR87_RS05545 0.84 -0.1
1,180,370 - ABZR87_RS05545 0.85 -0.3
1,180,370 - ABZR87_RS05545 0.85 +0.1
1,180,370 - ABZR87_RS05545 0.85 -0.9
1,180,370 - ABZR87_RS05545 0.85 -0.2
1,180,370 - ABZR87_RS05545 0.85 -0.3
1,180,420 + -0.2
1,180,421 - +0.0
1,180,520 - -1.4
1,180,565 - -0.1
1,180,565 - +0.7

Or see this region's nucleotide sequence