Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04670

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04660 and ABZR87_RS04665 are separated by 84 nucleotidesABZR87_RS04665 and ABZR87_RS04670 are separated by 102 nucleotidesABZR87_RS04670 and ABZR87_RS04675 are separated by 54 nucleotidesABZR87_RS04675 and ABZR87_RS04680 are separated by 219 nucleotides ABZR87_RS04660: ABZR87_RS04660 - bifunctional allantoicase/(S)-ureidoglycine aminohydrolase, at 974,312 to 975,148 _RS04660 ABZR87_RS04665: ABZR87_RS04665 - trans-aconitate 2-methyltransferase, at 975,233 to 976,012 _RS04665 ABZR87_RS04670: ABZR87_RS04670 - LysR family transcriptional regulator, at 976,115 to 977,011 _RS04670 ABZR87_RS04675: ABZR87_RS04675 - hypothetical protein, at 977,066 to 977,374 _RS04675 ABZR87_RS04680: ABZR87_RS04680 - nickel/cobalt efflux protein RcnA, at 977,594 to 978,721 _RS04680 Position (kb) 976 977 978Strain fitness (log2 ratio) -2 -1 0 1 2 3at 975.166 kb on + strandat 975.167 kb on - strandat 975.167 kb on - strandat 975.167 kb on - strandat 975.167 kb on - strandat 975.234 kb on + strandat 975.234 kb on + strandat 975.235 kb on - strandat 975.235 kb on - strandat 975.304 kb on - strandat 975.304 kb on - strandat 975.304 kb on - strandat 975.341 kb on + strand, within ABZR87_RS04665at 975.341 kb on + strand, within ABZR87_RS04665at 975.342 kb on - strand, within ABZR87_RS04665at 975.342 kb on - strand, within ABZR87_RS04665at 975.444 kb on + strand, within ABZR87_RS04665at 975.444 kb on + strand, within ABZR87_RS04665at 975.444 kb on + strand, within ABZR87_RS04665at 975.444 kb on + strand, within ABZR87_RS04665at 975.444 kb on + strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.445 kb on - strand, within ABZR87_RS04665at 975.495 kb on + strand, within ABZR87_RS04665at 975.495 kb on + strand, within ABZR87_RS04665at 975.495 kb on + strand, within ABZR87_RS04665at 975.496 kb on - strand, within ABZR87_RS04665at 975.498 kb on + strand, within ABZR87_RS04665at 975.498 kb on + strand, within ABZR87_RS04665at 975.498 kb on + strand, within ABZR87_RS04665at 975.723 kb on + strand, within ABZR87_RS04665at 975.904 kb on + strand, within ABZR87_RS04665at 975.955 kb on + strandat 975.955 kb on + strandat 975.956 kb on - strandat 975.956 kb on - strandat 975.978 kb on + strandat 975.978 kb on + strandat 975.979 kb on - strandat 975.979 kb on - strandat 975.990 kb on + strandat 975.990 kb on + strandat 975.990 kb on + strandat 975.991 kb on - strandat 976.107 kb on + strandat 976.174 kb on + strandat 976.174 kb on + strandat 976.433 kb on + strand, within ABZR87_RS04670at 976.434 kb on - strand, within ABZR87_RS04670at 976.434 kb on - strand, within ABZR87_RS04670at 976.434 kb on - strand, within ABZR87_RS04670at 976.614 kb on - strand, within ABZR87_RS04670at 976.614 kb on - strand, within ABZR87_RS04670at 976.614 kb on - strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.775 kb on + strand, within ABZR87_RS04670at 976.776 kb on - strand, within ABZR87_RS04670at 976.776 kb on - strand, within ABZR87_RS04670at 976.882 kb on + strand, within ABZR87_RS04670at 976.883 kb on - strand, within ABZR87_RS04670at 976.883 kb on - strand, within ABZR87_RS04670at 976.951 kb on - strandat 976.951 kb on - strandat 976.973 kb on + strandat 976.973 kb on + strandat 976.974 kb on - strandat 976.974 kb on - strandat 976.974 kb on - strandat 977.035 kb on + strandat 977.097 kb on + strand, within ABZR87_RS04675at 977.097 kb on + strand, within ABZR87_RS04675at 977.105 kb on - strand, within ABZR87_RS04675at 977.164 kb on - strand, within ABZR87_RS04675at 977.181 kb on + strand, within ABZR87_RS04675at 977.186 kb on - strand, within ABZR87_RS04675at 977.196 kb on + strand, within ABZR87_RS04675at 977.196 kb on + strand, within ABZR87_RS04675at 977.196 kb on + strand, within ABZR87_RS04675at 977.197 kb on - strand, within ABZR87_RS04675at 977.197 kb on - strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.202 kb on + strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.203 kb on - strand, within ABZR87_RS04675at 977.268 kb on + strand, within ABZR87_RS04675at 977.269 kb on - strand, within ABZR87_RS04675at 977.277 kb on + strand, within ABZR87_RS04675at 977.278 kb on - strand, within ABZR87_RS04675at 977.356 kb on + strandat 977.357 kb on - strandat 977.528 kb on + strandat 977.529 kb on - strandat 977.529 kb on - strandat 977.538 kb on + strandat 977.539 kb on - strandat 977.539 kb on - strandat 977.539 kb on - strandat 977.539 kb on - strandat 977.595 kb on + strandat 977.595 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.637 kb on + strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.638 kb on - strandat 977.673 kb on + strandat 977.979 kb on + strand, within ABZR87_RS04680at 977.980 kb on - strand, within ABZR87_RS04680

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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975,166 + -0.4
975,167 - +0.7
975,167 - -0.3
975,167 - -0.4
975,167 - +0.9
975,234 + -0.5
975,234 + +0.4
975,235 - -0.7
975,235 - -2.0
975,304 - +0.0
975,304 - +0.5
975,304 - -0.1
975,341 + ABZR87_RS04665 0.14 -0.2
975,341 + ABZR87_RS04665 0.14 -0.0
975,342 - ABZR87_RS04665 0.14 +0.0
975,342 - ABZR87_RS04665 0.14 +0.1
975,444 + ABZR87_RS04665 0.27 -0.1
975,444 + ABZR87_RS04665 0.27 +0.7
975,444 + ABZR87_RS04665 0.27 -0.2
975,444 + ABZR87_RS04665 0.27 +1.1
975,444 + ABZR87_RS04665 0.27 -0.1
975,445 - ABZR87_RS04665 0.27 +0.4
975,445 - ABZR87_RS04665 0.27 +1.0
975,445 - ABZR87_RS04665 0.27 -0.2
975,445 - ABZR87_RS04665 0.27 -0.5
975,445 - ABZR87_RS04665 0.27 -1.6
975,445 - ABZR87_RS04665 0.27 -0.7
975,445 - ABZR87_RS04665 0.27 -0.9
975,445 - ABZR87_RS04665 0.27 -1.2
975,445 - ABZR87_RS04665 0.27 -1.4
975,445 - ABZR87_RS04665 0.27 +2.7
975,445 - ABZR87_RS04665 0.27 -0.3
975,445 - ABZR87_RS04665 0.27 -0.0
975,445 - ABZR87_RS04665 0.27 +0.4
975,495 + ABZR87_RS04665 0.34 -0.6
975,495 + ABZR87_RS04665 0.34 -0.8
975,495 + ABZR87_RS04665 0.34 -0.9
975,496 - ABZR87_RS04665 0.34 -1.1
975,498 + ABZR87_RS04665 0.34 -0.3
975,498 + ABZR87_RS04665 0.34 +0.1
975,498 + ABZR87_RS04665 0.34 -0.0
975,723 + ABZR87_RS04665 0.63 +0.1
975,904 + ABZR87_RS04665 0.86 -0.3
975,955 + -0.8
975,955 + -0.2
975,956 - -0.5
975,956 - +0.8
975,978 + -0.2
975,978 + +0.5
975,979 - +0.9
975,979 - -0.7
975,990 + -0.1
975,990 + -0.8
975,990 + +0.0
975,991 - -0.1
976,107 + -2.0
976,174 + +3.3
976,174 + -0.8
976,433 + ABZR87_RS04670 0.35 -0.3
976,434 - ABZR87_RS04670 0.36 +1.0
976,434 - ABZR87_RS04670 0.36 -0.1
976,434 - ABZR87_RS04670 0.36 -0.4
976,614 - ABZR87_RS04670 0.56 +0.5
976,614 - ABZR87_RS04670 0.56 -0.1
976,614 - ABZR87_RS04670 0.56 +0.8
976,775 + ABZR87_RS04670 0.74 -0.0
976,775 + ABZR87_RS04670 0.74 +0.8
976,775 + ABZR87_RS04670 0.74 -0.3
976,775 + ABZR87_RS04670 0.74 +0.8
976,775 + ABZR87_RS04670 0.74 +0.6
976,775 + ABZR87_RS04670 0.74 +1.0
976,775 + ABZR87_RS04670 0.74 -2.7
976,776 - ABZR87_RS04670 0.74 -0.1
976,776 - ABZR87_RS04670 0.74 +1.8
976,882 + ABZR87_RS04670 0.86 -0.0
976,883 - ABZR87_RS04670 0.86 -0.3
976,883 - ABZR87_RS04670 0.86 +0.1
976,951 - +0.0
976,951 - +2.2
976,973 + -2.6
976,973 + -0.5
976,974 - +0.0
976,974 - -0.5
976,974 - +0.3
977,035 + +0.4
977,097 + ABZR87_RS04675 0.10 -0.6
977,097 + ABZR87_RS04675 0.10 -0.3
977,105 - ABZR87_RS04675 0.13 -0.1
977,164 - ABZR87_RS04675 0.32 -0.4
977,181 + ABZR87_RS04675 0.37 -0.0
977,186 - ABZR87_RS04675 0.39 -0.5
977,196 + ABZR87_RS04675 0.42 +0.0
977,196 + ABZR87_RS04675 0.42 -0.4
977,196 + ABZR87_RS04675 0.42 -0.3
977,197 - ABZR87_RS04675 0.42 +0.1
977,197 - ABZR87_RS04675 0.42 +0.5
977,202 + ABZR87_RS04675 0.44 -0.1
977,202 + ABZR87_RS04675 0.44 -0.2
977,202 + ABZR87_RS04675 0.44 +0.7
977,202 + ABZR87_RS04675 0.44 +0.2
977,202 + ABZR87_RS04675 0.44 -0.4
977,202 + ABZR87_RS04675 0.44 -0.2
977,202 + ABZR87_RS04675 0.44 -0.6
977,202 + ABZR87_RS04675 0.44 -0.3
977,202 + ABZR87_RS04675 0.44 +0.0
977,202 + ABZR87_RS04675 0.44 -0.9
977,202 + ABZR87_RS04675 0.44 -0.7
977,202 + ABZR87_RS04675 0.44 -0.8
977,202 + ABZR87_RS04675 0.44 +0.3
977,202 + ABZR87_RS04675 0.44 -0.4
977,202 + ABZR87_RS04675 0.44 +0.3
977,202 + ABZR87_RS04675 0.44 +0.2
977,202 + ABZR87_RS04675 0.44 +2.4
977,203 - ABZR87_RS04675 0.44 +0.2
977,203 - ABZR87_RS04675 0.44 -1.4
977,203 - ABZR87_RS04675 0.44 -1.4
977,203 - ABZR87_RS04675 0.44 -0.8
977,203 - ABZR87_RS04675 0.44 -1.9
977,203 - ABZR87_RS04675 0.44 -0.4
977,203 - ABZR87_RS04675 0.44 +2.5
977,203 - ABZR87_RS04675 0.44 +2.3
977,203 - ABZR87_RS04675 0.44 +0.0
977,203 - ABZR87_RS04675 0.44 -1.3
977,203 - ABZR87_RS04675 0.44 -1.3
977,203 - ABZR87_RS04675 0.44 +1.5
977,203 - ABZR87_RS04675 0.44 +0.8
977,203 - ABZR87_RS04675 0.44 -1.0
977,203 - ABZR87_RS04675 0.44 +0.1
977,203 - ABZR87_RS04675 0.44 +0.6
977,203 - ABZR87_RS04675 0.44 -0.2
977,203 - ABZR87_RS04675 0.44 -0.1
977,203 - ABZR87_RS04675 0.44 -1.1
977,268 + ABZR87_RS04675 0.65 -0.3
977,269 - ABZR87_RS04675 0.66 -1.4
977,277 + ABZR87_RS04675 0.68 -0.0
977,278 - ABZR87_RS04675 0.69 -0.5
977,356 + +0.8
977,357 - -0.9
977,528 + +0.1
977,529 - +0.2
977,529 - +0.6
977,538 + +0.2
977,539 - -1.6
977,539 - +0.2
977,539 - -2.1
977,539 - -1.2
977,595 + +0.6
977,595 + -1.2
977,637 + -1.1
977,637 + +0.5
977,637 + -0.5
977,637 + +0.7
977,637 + +0.2
977,637 + +0.4
977,637 + -0.2
977,637 + +0.5
977,638 - -1.0
977,638 - +0.9
977,638 - +0.0
977,638 - -0.4
977,638 - -0.8
977,638 - -1.2
977,638 - +1.4
977,638 - -0.3
977,638 - -0.8
977,638 - +0.1
977,673 + +0.3
977,979 + ABZR87_RS04680 0.34 +1.0
977,980 - ABZR87_RS04680 0.34 +0.6

Or see this region's nucleotide sequence