Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04515

Experiment: rhizosphere sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04510 and ABZR87_RS04515 are separated by 158 nucleotidesABZR87_RS04515 and ABZR87_RS04520 are separated by 15 nucleotides ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851 _RS04510 ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235 _RS04515 ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874 _RS04520 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 940.330 kb on + strand, within ABZR87_RS04510at 940.330 kb on + strand, within ABZR87_RS04510at 940.330 kb on + strand, within ABZR87_RS04510at 940.330 kb on + strand, within ABZR87_RS04510at 940.331 kb on - strand, within ABZR87_RS04510at 940.374 kb on + strand, within ABZR87_RS04510at 940.374 kb on + strand, within ABZR87_RS04510at 940.385 kb on - strand, within ABZR87_RS04510at 940.385 kb on - strand, within ABZR87_RS04510at 940.546 kb on + strand, within ABZR87_RS04510at 940.547 kb on - strand, within ABZR87_RS04510at 940.547 kb on - strand, within ABZR87_RS04510at 940.547 kb on - strand, within ABZR87_RS04510at 940.615 kb on + strand, within ABZR87_RS04510at 940.615 kb on + strand, within ABZR87_RS04510at 940.616 kb on - strand, within ABZR87_RS04510at 940.801 kb on + strandat 940.801 kb on + strandat 940.801 kb on + strandat 940.802 kb on - strandat 940.802 kb on - strandat 940.802 kb on - strandat 940.802 kb on - strandat 940.802 kb on - strandat 940.870 kb on - strandat 940.907 kb on + strandat 940.908 kb on - strandat 940.908 kb on - strandat 940.908 kb on - strandat 940.915 kb on + strandat 940.915 kb on + strandat 940.916 kb on - strandat 940.983 kb on - strandat 940.994 kb on + strandat 940.995 kb on - strandat 941.009 kb on + strandat 941.009 kb on + strandat 941.010 kb on - strandat 941.010 kb on - strandat 941.010 kb on - strandat 941.010 kb on - strandat 941.010 kb on - strandat 941.015 kb on + strandat 941.082 kb on - strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.088 kb on - strandat 941.126 kb on + strandat 941.126 kb on + strandat 941.127 kb on - strandat 941.127 kb on - strandat 941.127 kb on - strandat 941.210 kb on + strandat 941.211 kb on - strandat 941.268 kb on + strand, within ABZR87_RS04515at 941.269 kb on - strand, within ABZR87_RS04515at 941.874 kb on + strand, within ABZR87_RS04515at 941.874 kb on + strand, within ABZR87_RS04515at 941.924 kb on + strand, within ABZR87_RS04515at 942.294 kb on + strand, within ABZR87_RS04515at 942.294 kb on + strand, within ABZR87_RS04515at 942.294 kb on + strand, within ABZR87_RS04515at 942.294 kb on + strand, within ABZR87_RS04515at 942.294 kb on + strand, within ABZR87_RS04515at 942.295 kb on - strand, within ABZR87_RS04515at 942.295 kb on - strand, within ABZR87_RS04515at 942.295 kb on - strand, within ABZR87_RS04515at 942.295 kb on - strand, within ABZR87_RS04515at 942.295 kb on - strand, within ABZR87_RS04515at 942.342 kb on + strand, within ABZR87_RS04515at 942.342 kb on + strand, within ABZR87_RS04515at 942.342 kb on + strand, within ABZR87_RS04515at 942.343 kb on - strand, within ABZR87_RS04515at 942.343 kb on - strand, within ABZR87_RS04515at 942.945 kb on + strand, within ABZR87_RS04515at 942.945 kb on + strand, within ABZR87_RS04515at 942.945 kb on + strand, within ABZR87_RS04515at 942.981 kb on + strand, within ABZR87_RS04515at 942.981 kb on + strand, within ABZR87_RS04515at 943.107 kb on + strandat 943.155 kb on + strandat 943.156 kb on - strandat 943.156 kb on - strandat 943.156 kb on - strandat 943.233 kb on + strandat 943.233 kb on + strandat 943.333 kb on + strand, within ABZR87_RS04520at 943.333 kb on + strand, within ABZR87_RS04520at 943.333 kb on + strand, within ABZR87_RS04520at 943.368 kb on + strand, within ABZR87_RS04520at 943.494 kb on + strand, within ABZR87_RS04520at 943.494 kb on + strand, within ABZR87_RS04520at 943.494 kb on + strand, within ABZR87_RS04520at 943.495 kb on - strand, within ABZR87_RS04520at 943.533 kb on + strand, within ABZR87_RS04520at 943.533 kb on + strand, within ABZR87_RS04520at 943.533 kb on + strand, within ABZR87_RS04520at 943.534 kb on - strand, within ABZR87_RS04520at 943.534 kb on - strand, within ABZR87_RS04520at 943.571 kb on + strand, within ABZR87_RS04520at 943.700 kb on + strand, within ABZR87_RS04520at 943.700 kb on + strand, within ABZR87_RS04520at 943.701 kb on - strand, within ABZR87_RS04520at 943.701 kb on - strand, within ABZR87_RS04520at 943.720 kb on - strand, within ABZR87_RS04520at 943.720 kb on - strand, within ABZR87_RS04520at 943.826 kb on + strandat 943.826 kb on + strandat 943.826 kb on + strandat 943.827 kb on - strandat 943.979 kb on + strandat 944.222 kb on + strandat 944.222 kb on + strandat 944.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
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940,330 + ABZR87_RS04510 0.71 +1.5
940,330 + ABZR87_RS04510 0.71 -0.2
940,330 + ABZR87_RS04510 0.71 +0.3
940,330 + ABZR87_RS04510 0.71 +1.0
940,331 - ABZR87_RS04510 0.71 -0.0
940,374 + ABZR87_RS04510 0.73 -0.9
940,374 + ABZR87_RS04510 0.73 -0.1
940,385 - ABZR87_RS04510 0.74 -1.3
940,385 - ABZR87_RS04510 0.74 +0.2
940,546 + ABZR87_RS04510 0.83 -1.1
940,547 - ABZR87_RS04510 0.83 -0.5
940,547 - ABZR87_RS04510 0.83 -1.4
940,547 - ABZR87_RS04510 0.83 -1.2
940,615 + ABZR87_RS04510 0.87 -0.7
940,615 + ABZR87_RS04510 0.87 -1.3
940,616 - ABZR87_RS04510 0.87 +0.1
940,801 + -2.2
940,801 + +0.0
940,801 + +1.0
940,802 - -0.5
940,802 - -0.5
940,802 - +0.7
940,802 - +0.7
940,802 - +0.7
940,870 - +0.6
940,907 + -0.8
940,908 - -0.6
940,908 - -0.8
940,908 - -0.2
940,915 + +0.1
940,915 + +1.4
940,916 - -0.5
940,983 - -0.8
940,994 + -0.4
940,995 - -0.2
941,009 + -0.1
941,009 + +0.6
941,010 - -0.8
941,010 - -0.3
941,010 - +2.8
941,010 - +3.7
941,010 - -0.3
941,015 + +0.4
941,082 - -0.9
941,087 + +0.4
941,087 + -0.2
941,087 + +1.0
941,088 - +1.1
941,126 + -0.3
941,126 + -0.5
941,127 - -0.6
941,127 - -1.2
941,127 - -1.0
941,210 + +0.3
941,211 - +0.4
941,268 + ABZR87_RS04515 0.12 +0.0
941,269 - ABZR87_RS04515 0.12 -0.4
941,874 + ABZR87_RS04515 0.39 -1.0
941,874 + ABZR87_RS04515 0.39 -1.9
941,924 + ABZR87_RS04515 0.41 +0.4
942,294 + ABZR87_RS04515 0.58 +1.7
942,294 + ABZR87_RS04515 0.58 +0.5
942,294 + ABZR87_RS04515 0.58 +0.8
942,294 + ABZR87_RS04515 0.58 -0.8
942,294 + ABZR87_RS04515 0.58 +1.4
942,295 - ABZR87_RS04515 0.58 -0.6
942,295 - ABZR87_RS04515 0.58 +0.9
942,295 - ABZR87_RS04515 0.58 +0.7
942,295 - ABZR87_RS04515 0.58 -0.1
942,295 - ABZR87_RS04515 0.58 -0.1
942,342 + ABZR87_RS04515 0.60 -0.8
942,342 + ABZR87_RS04515 0.60 +1.3
942,342 + ABZR87_RS04515 0.60 -0.1
942,343 - ABZR87_RS04515 0.60 -0.7
942,343 - ABZR87_RS04515 0.60 +0.3
942,945 + ABZR87_RS04515 0.87 +0.7
942,945 + ABZR87_RS04515 0.87 +0.5
942,945 + ABZR87_RS04515 0.87 +1.0
942,981 + ABZR87_RS04515 0.89 +0.8
942,981 + ABZR87_RS04515 0.89 -0.2
943,107 + -0.0
943,155 + +0.1
943,156 - -0.3
943,156 - -0.2
943,156 - -0.4
943,233 + -0.9
943,233 + +0.0
943,333 + ABZR87_RS04520 0.13 -0.2
943,333 + ABZR87_RS04520 0.13 -0.3
943,333 + ABZR87_RS04520 0.13 -1.1
943,368 + ABZR87_RS04520 0.19 +0.2
943,494 + ABZR87_RS04520 0.39 +0.4
943,494 + ABZR87_RS04520 0.39 +1.8
943,494 + ABZR87_RS04520 0.39 -0.4
943,495 - ABZR87_RS04520 0.39 -0.0
943,533 + ABZR87_RS04520 0.45 -1.5
943,533 + ABZR87_RS04520 0.45 -0.6
943,533 + ABZR87_RS04520 0.45 +0.7
943,534 - ABZR87_RS04520 0.45 +1.2
943,534 - ABZR87_RS04520 0.45 -0.5
943,571 + ABZR87_RS04520 0.51 -0.7
943,700 + ABZR87_RS04520 0.72 -0.3
943,700 + ABZR87_RS04520 0.72 +0.6
943,701 - ABZR87_RS04520 0.72 -0.3
943,701 - ABZR87_RS04520 0.72 -1.6
943,720 - ABZR87_RS04520 0.75 +0.4
943,720 - ABZR87_RS04520 0.75 +0.0
943,826 + +0.7
943,826 + +0.7
943,826 + +2.7
943,827 - -0.8
943,979 + -0.2
944,222 + +0.3
944,222 + -1.9
944,223 - -1.0

Or see this region's nucleotide sequence