Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04430 and ABZR87_RS04435 are separated by 161 nucleotides ABZR87_RS04435 and ABZR87_RS04440 are separated by 399 nucleotides ABZR87_RS04440 and ABZR87_RS04445 overlap by 7 nucleotides
ABZR87_RS04430: ABZR87_RS04430 - hypothetical protein, at 928,410 to 929,231
_RS04430
ABZR87_RS04435: ABZR87_RS04435 - lysozyme inhibitor LprI family protein, at 929,393 to 929,854
_RS04435
ABZR87_RS04440: ABZR87_RS04440 - metalloregulator ArsR/SmtB family transcription factor, at 930,254 to 930,574
_RS04440
ABZR87_RS04445: ABZR87_RS04445 - arsenate reductase ArsC, at 930,568 to 931,086
_RS04445
Position (kb) 929
930 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.444 kb on + strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.445 kb on - strand at 928.459 kb on + strand at 928.460 kb on - strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.471 kb on + strand at 928.472 kb on - strand at 928.573 kb on + strand, within ABZR87_RS04430 at 928.643 kb on + strand, within ABZR87_RS04430 at 928.644 kb on - strand, within ABZR87_RS04430 at 928.717 kb on + strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.718 kb on - strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.779 kb on + strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.780 kb on - strand, within ABZR87_RS04430 at 928.791 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.813 kb on + strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.814 kb on - strand, within ABZR87_RS04430 at 928.944 kb on - strand, within ABZR87_RS04430 at 929.015 kb on + strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.016 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.081 kb on - strand, within ABZR87_RS04430 at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.214 kb on + strand at 929.215 kb on - strand at 929.294 kb on + strand at 929.350 kb on + strand at 929.351 kb on - strand at 929.351 kb on - strand at 929.351 kb on - strand at 929.351 kb on - strand at 929.351 kb on - strand at 929.387 kb on + strand at 929.387 kb on + strand at 929.387 kb on + strand at 929.387 kb on + strand at 929.387 kb on + strand at 929.388 kb on - strand at 929.388 kb on - strand at 929.404 kb on + strand at 929.404 kb on + strand at 929.405 kb on - strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.427 kb on + strand at 929.428 kb on - strand at 929.428 kb on - strand at 929.428 kb on - strand at 929.452 kb on + strand, within ABZR87_RS04435 at 929.453 kb on - strand, within ABZR87_RS04435 at 929.470 kb on + strand, within ABZR87_RS04435 at 929.470 kb on + strand, within ABZR87_RS04435 at 929.471 kb on - strand, within ABZR87_RS04435 at 929.471 kb on - strand, within ABZR87_RS04435 at 929.475 kb on + strand, within ABZR87_RS04435 at 929.609 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.618 kb on + strand, within ABZR87_RS04435 at 929.643 kb on - strand, within ABZR87_RS04435 at 929.643 kb on - strand, within ABZR87_RS04435 at 929.840 kb on + strand at 929.840 kb on + strand at 929.841 kb on - strand at 929.841 kb on - strand at 929.844 kb on - strand at 929.844 kb on - strand at 929.844 kb on - strand at 929.852 kb on + strand at 929.853 kb on - strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.903 kb on + strand at 929.904 kb on - strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.960 kb on + strand at 929.961 kb on - strand at 929.961 kb on - strand at 929.961 kb on - strand at 930.081 kb on + strand at 930.094 kb on + strand at 930.094 kb on + strand at 930.095 kb on - strand at 930.095 kb on - strand at 930.095 kb on - strand at 930.108 kb on + strand at 930.109 kb on - strand at 930.111 kb on + strand at 930.111 kb on + strand at 930.112 kb on - strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.114 kb on + strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.115 kb on - strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.117 kb on + strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.118 kb on - strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.125 kb on + strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.126 kb on - strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.129 kb on + strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.130 kb on - strand at 930.137 kb on + strand at 930.137 kb on + strand at 930.138 kb on - strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.143 kb on + strand at 930.144 kb on - strand at 930.144 kb on - strand at 930.146 kb on - strand at 930.233 kb on + strand at 930.233 kb on + strand at 930.234 kb on - strand at 930.242 kb on + strand at 930.242 kb on + strand at 930.242 kb on + strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.243 kb on - strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.253 kb on + strand at 930.254 kb on - strand at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.465 kb on + strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.466 kb on - strand, within ABZR87_RS04440 at 930.483 kb on - strand, within ABZR87_RS04440 at 930.483 kb on - strand, within ABZR87_RS04440 at 930.684 kb on + strand, within ABZR87_RS04445 at 930.685 kb on - strand, within ABZR87_RS04445 at 930.685 kb on - strand, within ABZR87_RS04445 at 930.700 kb on + strand, within ABZR87_RS04445 at 930.701 kb on - strand, within ABZR87_RS04445 at 930.701 kb on - strand, within ABZR87_RS04445 at 930.792 kb on + strand, within ABZR87_RS04445 at 930.792 kb on + strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.793 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445 at 930.852 kb on - strand, within ABZR87_RS04445
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 928,444 + +0.1 928,444 + +0.1 928,444 + +0.3 928,444 + -0.2 928,444 + -0.1 928,444 + -0.1 928,444 + -0.9 928,445 - +0.7 928,445 - -0.0 928,445 - -0.1 928,445 - -0.1 928,459 + +0.3 928,460 - +0.1 928,471 + +0.6 928,471 + -0.2 928,471 + -1.0 928,471 + +0.1 928,472 - -0.9 928,573 + ABZR87_RS04430 0.20 -0.1 928,643 + ABZR87_RS04430 0.28 -0.4 928,644 - ABZR87_RS04430 0.28 +0.4 928,717 + ABZR87_RS04430 0.37 -0.0 928,718 - ABZR87_RS04430 0.37 -0.9 928,718 - ABZR87_RS04430 0.37 +0.2 928,779 + ABZR87_RS04430 0.45 -0.2 928,779 + ABZR87_RS04430 0.45 +0.9 928,780 - ABZR87_RS04430 0.45 -0.3 928,780 - ABZR87_RS04430 0.45 -1.0 928,780 - ABZR87_RS04430 0.45 +1.1 928,791 + ABZR87_RS04430 0.46 +0.2 928,813 + ABZR87_RS04430 0.49 -0.1 928,813 + ABZR87_RS04430 0.49 -0.4 928,813 + ABZR87_RS04430 0.49 -0.4 928,813 + ABZR87_RS04430 0.49 -1.1 928,813 + ABZR87_RS04430 0.49 +0.6 928,813 + ABZR87_RS04430 0.49 +2.5 928,813 + ABZR87_RS04430 0.49 +0.1 928,813 + ABZR87_RS04430 0.49 -1.0 928,814 - ABZR87_RS04430 0.49 +0.0 928,814 - ABZR87_RS04430 0.49 +2.1 928,814 - ABZR87_RS04430 0.49 +0.1 928,814 - ABZR87_RS04430 0.49 -0.5 928,814 - ABZR87_RS04430 0.49 -0.9 928,814 - ABZR87_RS04430 0.49 +0.4 928,814 - ABZR87_RS04430 0.49 -0.8 928,944 - ABZR87_RS04430 0.65 -0.0 929,015 + ABZR87_RS04430 0.74 +0.7 929,016 - ABZR87_RS04430 0.74 +0.4 929,016 - ABZR87_RS04430 0.74 -0.3 929,081 - ABZR87_RS04430 0.82 -0.3 929,081 - ABZR87_RS04430 0.82 -0.4 929,214 + -0.4 929,214 + +0.8 929,214 + +1.4 929,214 + +0.3 929,215 - +1.3 929,294 + +0.6 929,350 + +0.3 929,351 - -0.5 929,351 - +0.6 929,351 - -1.4 929,351 - +0.3 929,351 - +0.8 929,387 + -0.8 929,387 + -4.1 929,387 + -0.7 929,387 + -1.9 929,387 + +0.1 929,388 - -1.3 929,388 - -0.9 929,404 + -0.0 929,404 + +0.0 929,405 - -0.5 929,427 + +0.5 929,427 + -0.9 929,427 + -0.2 929,427 + -0.3 929,427 + +0.2 929,428 - +1.9 929,428 - +0.2 929,428 - +0.7 929,452 + ABZR87_RS04435 0.13 -1.4 929,453 - ABZR87_RS04435 0.13 -0.9 929,470 + ABZR87_RS04435 0.17 -0.1 929,470 + ABZR87_RS04435 0.17 -0.5 929,471 - ABZR87_RS04435 0.17 -1.8 929,471 - ABZR87_RS04435 0.17 -1.8 929,475 + ABZR87_RS04435 0.18 -1.0 929,609 + ABZR87_RS04435 0.47 -0.7 929,618 + ABZR87_RS04435 0.49 -0.8 929,618 + ABZR87_RS04435 0.49 +0.2 929,618 + ABZR87_RS04435 0.49 +0.7 929,643 - ABZR87_RS04435 0.54 +0.2 929,643 - ABZR87_RS04435 0.54 -1.9 929,840 + -0.6 929,840 + -2.7 929,841 - +0.0 929,841 - +1.0 929,844 - -0.6 929,844 - -1.4 929,844 - +1.0 929,852 + -1.0 929,853 - +0.1 929,903 + -0.9 929,903 + -1.0 929,903 + +0.1 929,903 + +0.2 929,904 - -1.4 929,960 + -0.5 929,960 + +0.5 929,960 + +0.1 929,960 + -0.1 929,961 - -0.1 929,961 - -1.3 929,961 - -0.1 930,081 + -1.2 930,094 + -0.1 930,094 + -1.5 930,095 - +0.6 930,095 - -0.9 930,095 - -1.3 930,108 + -0.7 930,109 - -2.0 930,111 + +0.5 930,111 + +0.6 930,112 - +0.4 930,114 + -1.2 930,114 + +0.5 930,114 + +0.8 930,114 + -0.3 930,114 + +1.5 930,115 - +1.4 930,115 - +0.7 930,115 - +1.3 930,115 - -1.3 930,115 - +0.7 930,117 + +0.9 930,117 + -0.5 930,117 + +0.4 930,117 + +0.1 930,117 + +1.4 930,117 + -0.5 930,117 + +1.1 930,118 - +0.1 930,118 - -0.5 930,118 - +0.4 930,118 - +0.1 930,118 - -0.2 930,118 - -0.5 930,118 - +0.0 930,118 - +0.2 930,118 - +0.9 930,118 - +0.2 930,125 + +0.5 930,125 + -2.6 930,125 + +1.0 930,125 + +0.2 930,126 - -0.7 930,126 - -1.1 930,126 - +0.0 930,126 - +0.7 930,129 + -1.1 930,129 + -0.4 930,129 + +0.2 930,129 + -0.5 930,130 - +0.0 930,130 - +0.0 930,130 - -0.7 930,130 - -0.2 930,137 + +0.2 930,137 + +1.0 930,138 - -1.2 930,143 + +0.4 930,143 + +0.4 930,143 + -1.6 930,143 + +0.5 930,144 - +1.1 930,144 - +0.6 930,146 - -0.5 930,233 + -1.2 930,233 + +1.1 930,234 - +0.6 930,242 + +0.2 930,242 + -0.8 930,242 + +0.7 930,243 - +0.5 930,243 - +0.9 930,243 - +0.6 930,243 - +0.1 930,253 + -0.4 930,253 + -0.8 930,253 + -0.4 930,253 + -0.3 930,253 + +0.2 930,254 - +0.1 930,465 + ABZR87_RS04440 0.66 +0.4 930,465 + ABZR87_RS04440 0.66 +0.9 930,465 + ABZR87_RS04440 0.66 -0.6 930,465 + ABZR87_RS04440 0.66 +0.7 930,465 + ABZR87_RS04440 0.66 +0.9 930,466 - ABZR87_RS04440 0.66 +0.1 930,466 - ABZR87_RS04440 0.66 +1.4 930,466 - ABZR87_RS04440 0.66 -0.8 930,466 - ABZR87_RS04440 0.66 +0.2 930,466 - ABZR87_RS04440 0.66 +0.5 930,466 - ABZR87_RS04440 0.66 -0.2 930,483 - ABZR87_RS04440 0.71 -0.5 930,483 - ABZR87_RS04440 0.71 +0.0 930,684 + ABZR87_RS04445 0.22 -0.9 930,685 - ABZR87_RS04445 0.23 -0.3 930,685 - ABZR87_RS04445 0.23 +0.0 930,700 + ABZR87_RS04445 0.25 -1.1 930,701 - ABZR87_RS04445 0.26 -1.2 930,701 - ABZR87_RS04445 0.26 -1.4 930,792 + ABZR87_RS04445 0.43 -1.3 930,792 + ABZR87_RS04445 0.43 -0.3 930,793 - ABZR87_RS04445 0.43 +0.1 930,793 - ABZR87_RS04445 0.43 -1.0 930,793 - ABZR87_RS04445 0.43 +0.4 930,852 - ABZR87_RS04445 0.55 +0.5 930,852 - ABZR87_RS04445 0.55 -0.4 930,852 - ABZR87_RS04445 0.55 +0.2 930,852 - ABZR87_RS04445 0.55 -0.6
Or see this region's nucleotide sequence