Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04365 and ABZR87_RS04370 are separated by 83 nucleotides ABZR87_RS04370 and ABZR87_RS04375 are separated by 102 nucleotides ABZR87_RS04375 and ABZR87_RS04380 are separated by 288 nucleotides
ABZR87_RS04365: ABZR87_RS04365 - polyphosphate kinase 2, at 910,907 to 911,809
_RS04365
ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479
_RS04370
ABZR87_RS04375: ABZR87_RS04375 - acylphosphatase, at 913,582 to 913,869
_RS04375
ABZR87_RS04380: ABZR87_RS04380 - ABC transporter permease subunit, at 914,158 to 915,942
_RS04380
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 911.054 kb on + strand, within ABZR87_RS04365 at 911.054 kb on + strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.055 kb on - strand, within ABZR87_RS04365 at 911.143 kb on - strand, within ABZR87_RS04365 at 911.264 kb on + strand, within ABZR87_RS04365 at 911.265 kb on - strand, within ABZR87_RS04365 at 911.265 kb on - strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.276 kb on + strand, within ABZR87_RS04365 at 911.277 kb on - strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.280 kb on + strand, within ABZR87_RS04365 at 911.281 kb on - strand, within ABZR87_RS04365 at 911.330 kb on + strand, within ABZR87_RS04365 at 911.331 kb on - strand, within ABZR87_RS04365 at 911.381 kb on + strand, within ABZR87_RS04365 at 911.381 kb on + strand, within ABZR87_RS04365 at 911.453 kb on + strand, within ABZR87_RS04365 at 911.454 kb on - strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.573 kb on + strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.574 kb on - strand, within ABZR87_RS04365 at 911.575 kb on + strand, within ABZR87_RS04365 at 911.576 kb on - strand, within ABZR87_RS04365 at 911.576 kb on - strand, within ABZR87_RS04365 at 911.702 kb on + strand, within ABZR87_RS04365 at 911.702 kb on + strand, within ABZR87_RS04365 at 911.703 kb on - strand, within ABZR87_RS04365 at 911.759 kb on + strand at 911.759 kb on + strand at 911.759 kb on + strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.760 kb on - strand at 911.804 kb on + strand at 911.890 kb on + strand at 911.918 kb on + strand at 911.919 kb on - strand at 911.919 kb on - strand at 911.919 kb on - strand at 911.988 kb on + strand at 911.989 kb on - strand at 911.989 kb on - strand at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.074 kb on + strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.075 kb on - strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.134 kb on + strand, within ABZR87_RS04370 at 912.281 kb on + strand, within ABZR87_RS04370 at 912.281 kb on + strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.282 kb on - strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.365 kb on + strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.366 kb on - strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.506 kb on + strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.507 kb on - strand, within ABZR87_RS04370 at 912.557 kb on + strand, within ABZR87_RS04370 at 912.557 kb on + strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.558 kb on - strand, within ABZR87_RS04370 at 912.797 kb on + strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 912.798 kb on - strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.019 kb on + strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.020 kb on - strand, within ABZR87_RS04370 at 913.141 kb on + strand, within ABZR87_RS04370 at 913.142 kb on - strand, within ABZR87_RS04370 at 913.226 kb on + strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.227 kb on - strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.309 kb on + strand, within ABZR87_RS04370 at 913.310 kb on - strand, within ABZR87_RS04370 at 913.379 kb on + strand at 913.379 kb on + strand at 913.419 kb on + strand at 913.419 kb on + strand at 913.420 kb on - strand at 913.420 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.517 kb on - strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.536 kb on + strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.537 kb on - strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.583 kb on + strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.584 kb on - strand at 913.837 kb on + strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.838 kb on - strand, within ABZR87_RS04375 at 913.908 kb on + strand at 913.909 kb on - strand at 913.999 kb on + strand at 914.000 kb on - strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.008 kb on + strand at 914.013 kb on + strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.014 kb on - strand at 914.074 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.075 kb on + strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.076 kb on - strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.089 kb on + strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.090 kb on - strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.317 kb on + strand at 914.344 kb on + strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.396 kb on - strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.398 kb on + strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380 at 914.399 kb on - strand, within ABZR87_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 911,054 + ABZR87_RS04365 0.16 +0.3 911,054 + ABZR87_RS04365 0.16 +0.7 911,055 - ABZR87_RS04365 0.16 -0.2 911,055 - ABZR87_RS04365 0.16 -0.7 911,055 - ABZR87_RS04365 0.16 +0.1 911,143 - ABZR87_RS04365 0.26 -0.0 911,264 + ABZR87_RS04365 0.40 -0.8 911,265 - ABZR87_RS04365 0.40 +0.1 911,265 - ABZR87_RS04365 0.40 -0.2 911,276 + ABZR87_RS04365 0.41 +0.5 911,276 + ABZR87_RS04365 0.41 -0.9 911,276 + ABZR87_RS04365 0.41 -1.0 911,277 - ABZR87_RS04365 0.41 +0.0 911,280 + ABZR87_RS04365 0.41 +0.5 911,280 + ABZR87_RS04365 0.41 +0.0 911,280 + ABZR87_RS04365 0.41 +1.0 911,281 - ABZR87_RS04365 0.41 -0.1 911,330 + ABZR87_RS04365 0.47 -0.3 911,331 - ABZR87_RS04365 0.47 +0.2 911,381 + ABZR87_RS04365 0.52 -0.5 911,381 + ABZR87_RS04365 0.52 +0.5 911,453 + ABZR87_RS04365 0.60 -0.8 911,454 - ABZR87_RS04365 0.61 +1.1 911,573 + ABZR87_RS04365 0.74 +0.3 911,573 + ABZR87_RS04365 0.74 +0.6 911,573 + ABZR87_RS04365 0.74 +0.0 911,574 - ABZR87_RS04365 0.74 +0.7 911,574 - ABZR87_RS04365 0.74 -0.2 911,574 - ABZR87_RS04365 0.74 -0.8 911,574 - ABZR87_RS04365 0.74 +0.4 911,575 + ABZR87_RS04365 0.74 -1.1 911,576 - ABZR87_RS04365 0.74 +1.5 911,576 - ABZR87_RS04365 0.74 -0.4 911,702 + ABZR87_RS04365 0.88 +0.5 911,702 + ABZR87_RS04365 0.88 -1.7 911,703 - ABZR87_RS04365 0.88 +0.4 911,759 + -0.2 911,759 + -1.6 911,759 + +1.3 911,760 - +0.9 911,760 - -1.1 911,760 - +0.5 911,760 - +0.1 911,760 - -0.4 911,760 - +0.4 911,804 + +1.6 911,890 + -0.7 911,918 + -2.0 911,919 - -0.4 911,919 - -0.6 911,919 - -1.2 911,988 + +0.8 911,989 - -0.3 911,989 - -1.3 912,074 + ABZR87_RS04370 0.11 -0.7 912,074 + ABZR87_RS04370 0.11 -0.5 912,074 + ABZR87_RS04370 0.11 +0.2 912,074 + ABZR87_RS04370 0.11 +0.1 912,074 + ABZR87_RS04370 0.11 -3.0 912,075 - ABZR87_RS04370 0.11 -0.3 912,075 - ABZR87_RS04370 0.11 -0.3 912,075 - ABZR87_RS04370 0.11 -0.4 912,075 - ABZR87_RS04370 0.11 -0.2 912,134 + ABZR87_RS04370 0.15 -1.1 912,134 + ABZR87_RS04370 0.15 +0.1 912,134 + ABZR87_RS04370 0.15 +0.1 912,281 + ABZR87_RS04370 0.24 +1.0 912,281 + ABZR87_RS04370 0.24 -1.5 912,282 - ABZR87_RS04370 0.25 -0.1 912,282 - ABZR87_RS04370 0.25 -0.5 912,282 - ABZR87_RS04370 0.25 +0.6 912,282 - ABZR87_RS04370 0.25 +0.2 912,282 - ABZR87_RS04370 0.25 +0.4 912,282 - ABZR87_RS04370 0.25 -1.8 912,282 - ABZR87_RS04370 0.25 -0.6 912,282 - ABZR87_RS04370 0.25 +0.7 912,365 + ABZR87_RS04370 0.30 +0.3 912,365 + ABZR87_RS04370 0.30 -0.3 912,365 + ABZR87_RS04370 0.30 -0.6 912,365 + ABZR87_RS04370 0.30 -0.0 912,366 - ABZR87_RS04370 0.30 +0.8 912,366 - ABZR87_RS04370 0.30 +0.3 912,366 - ABZR87_RS04370 0.30 +0.2 912,366 - ABZR87_RS04370 0.30 -0.2 912,366 - ABZR87_RS04370 0.30 +0.0 912,506 + ABZR87_RS04370 0.39 -1.4 912,506 + ABZR87_RS04370 0.39 +0.5 912,506 + ABZR87_RS04370 0.39 +0.8 912,506 + ABZR87_RS04370 0.39 -0.3 912,506 + ABZR87_RS04370 0.39 -0.6 912,507 - ABZR87_RS04370 0.39 +0.8 912,507 - ABZR87_RS04370 0.39 -1.3 912,507 - ABZR87_RS04370 0.39 +0.6 912,507 - ABZR87_RS04370 0.39 +0.2 912,507 - ABZR87_RS04370 0.39 -0.3 912,507 - ABZR87_RS04370 0.39 -0.1 912,557 + ABZR87_RS04370 0.42 -0.5 912,557 + ABZR87_RS04370 0.42 +0.5 912,558 - ABZR87_RS04370 0.42 -0.6 912,558 - ABZR87_RS04370 0.42 +0.1 912,558 - ABZR87_RS04370 0.42 -0.3 912,558 - ABZR87_RS04370 0.42 -0.5 912,558 - ABZR87_RS04370 0.42 -0.2 912,797 + ABZR87_RS04370 0.57 -0.2 912,798 - ABZR87_RS04370 0.57 +0.3 912,798 - ABZR87_RS04370 0.57 +0.0 913,019 + ABZR87_RS04370 0.71 +0.1 913,019 + ABZR87_RS04370 0.71 +0.5 913,019 + ABZR87_RS04370 0.71 -0.0 913,019 + ABZR87_RS04370 0.71 -0.7 913,019 + ABZR87_RS04370 0.71 +0.6 913,019 + ABZR87_RS04370 0.71 -0.8 913,020 - ABZR87_RS04370 0.71 +1.4 913,020 - ABZR87_RS04370 0.71 +0.4 913,141 + ABZR87_RS04370 0.79 -0.2 913,142 - ABZR87_RS04370 0.79 +0.2 913,226 + ABZR87_RS04370 0.84 -0.2 913,227 - ABZR87_RS04370 0.84 -0.1 913,227 - ABZR87_RS04370 0.84 -0.8 913,309 + ABZR87_RS04370 0.89 +0.8 913,309 + ABZR87_RS04370 0.89 -0.6 913,310 - ABZR87_RS04370 0.89 +0.3 913,379 + -0.8 913,379 + -0.8 913,419 + -0.3 913,419 + +0.6 913,420 - +0.2 913,420 - -0.4 913,517 - +1.6 913,517 - +0.2 913,517 - +0.6 913,536 + -0.8 913,536 + -0.7 913,536 + +0.5 913,537 - -0.7 913,537 - +0.6 913,537 - -0.0 913,537 - -1.5 913,537 - -1.1 913,583 + -0.8 913,583 + -0.6 913,583 + -0.7 913,583 + +1.1 913,583 + +0.1 913,584 - -0.9 913,584 - -0.5 913,584 - +0.7 913,584 - +0.4 913,584 - +0.1 913,584 - +1.7 913,837 + ABZR87_RS04375 0.89 +0.6 913,838 - ABZR87_RS04375 0.89 +0.3 913,838 - ABZR87_RS04375 0.89 +0.5 913,838 - ABZR87_RS04375 0.89 +0.4 913,908 + -0.1 913,909 - -0.3 913,999 + +0.7 914,000 - -1.1 914,008 + -0.5 914,008 + +0.2 914,008 + -0.9 914,013 + -0.3 914,014 - +1.6 914,014 - +0.1 914,014 - +0.2 914,074 + -0.1 914,075 + -0.0 914,075 + +0.1 914,075 + -0.6 914,075 + -0.1 914,075 + +1.4 914,075 + -1.6 914,076 - -0.5 914,076 - -0.9 914,076 - +0.1 914,076 - -0.2 914,076 - -0.2 914,076 - -0.0 914,076 - +0.5 914,076 - -0.2 914,089 + -0.1 914,089 + -1.1 914,089 + -0.2 914,089 + +0.5 914,089 + -0.2 914,089 + +0.9 914,089 + +0.0 914,089 + -1.8 914,090 - +0.2 914,090 - +0.0 914,090 - -1.6 914,090 - +0.6 914,090 - -0.3 914,090 - -0.5 914,090 - +1.6 914,090 - +0.9 914,317 + -0.4 914,317 + +0.1 914,317 + -1.9 914,344 + ABZR87_RS04380 0.10 -0.2 914,396 - ABZR87_RS04380 0.13 -0.5 914,396 - ABZR87_RS04380 0.13 +0.6 914,396 - ABZR87_RS04380 0.13 -0.5 914,396 - ABZR87_RS04380 0.13 -0.1 914,398 + ABZR87_RS04380 0.13 -0.6 914,398 + ABZR87_RS04380 0.13 -0.4 914,398 + ABZR87_RS04380 0.13 +1.1 914,398 + ABZR87_RS04380 0.13 +1.1 914,398 + ABZR87_RS04380 0.13 -1.9 914,399 - ABZR87_RS04380 0.14 -0.0 914,399 - ABZR87_RS04380 0.14 +0.5 914,399 - ABZR87_RS04380 0.14 +0.7
Or see this region's nucleotide sequence