Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03075 and ABZR87_RS03080 are separated by 8 nucleotides ABZR87_RS03080 and ABZR87_RS03085 are separated by 665 nucleotides
ABZR87_RS03075: ABZR87_RS03075 - AGE family epimerase/isomerase, at 645,993 to 647,246
_RS03075
ABZR87_RS03080: ABZR87_RS03080 - MFS transporter, at 647,255 to 648,556
_RS03080
ABZR87_RS03085: ABZR87_RS03085 - ABC transporter substrate-binding protein, at 649,222 to 650,313
_RS03085
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.408 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.716 kb on - strand, within ABZR87_RS03075 at 646.805 kb on - strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.844 kb on + strand, within ABZR87_RS03075 at 646.845 kb on - strand, within ABZR87_RS03075 at 647.166 kb on + strand at 647.166 kb on + strand at 647.166 kb on + strand at 647.167 kb on - strand at 647.185 kb on - strand at 647.228 kb on + strand at 647.228 kb on + strand at 647.229 kb on - strand at 647.229 kb on - strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.480 kb on + strand, within ABZR87_RS03080 at 647.480 kb on + strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.666 kb on + strand, within ABZR87_RS03080 at 647.667 kb on - strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.200 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.289 kb on + strand, within ABZR87_RS03080 at 648.289 kb on + strand, within ABZR87_RS03080 at 648.290 kb on - strand, within ABZR87_RS03080 at 648.290 kb on - strand, within ABZR87_RS03080 at 648.362 kb on + strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.490 kb on + strand at 648.490 kb on + strand at 648.491 kb on - strand at 648.491 kb on - strand at 648.554 kb on + strand at 648.554 kb on + strand at 648.555 kb on - strand at 648.555 kb on - strand at 648.555 kb on - strand at 648.854 kb on + strand at 648.854 kb on + strand at 648.854 kb on + strand at 648.854 kb on + strand at 649.268 kb on + strand at 649.268 kb on + strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.372 kb on - strand, within ABZR87_RS03085 at 649.372 kb on - strand, within ABZR87_RS03085 at 649.550 kb on + strand, within ABZR87_RS03085 at 649.551 kb on - strand, within ABZR87_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 646,407 + ABZR87_RS03075 0.33 +3.7 646,407 + ABZR87_RS03075 0.33 +4.2 646,408 - ABZR87_RS03075 0.33 +5.2 646,624 - ABZR87_RS03075 0.50 +3.4 646,624 - ABZR87_RS03075 0.50 +2.8 646,624 - ABZR87_RS03075 0.50 +5.7 646,624 - ABZR87_RS03075 0.50 +3.2 646,716 - ABZR87_RS03075 0.58 +5.0 646,805 - ABZR87_RS03075 0.65 +2.7 646,815 + ABZR87_RS03075 0.66 +5.1 646,815 + ABZR87_RS03075 0.66 +4.6 646,816 - ABZR87_RS03075 0.66 +4.4 646,816 - ABZR87_RS03075 0.66 +6.1 646,816 - ABZR87_RS03075 0.66 +4.6 646,816 - ABZR87_RS03075 0.66 +4.6 646,816 - ABZR87_RS03075 0.66 +5.0 646,816 - ABZR87_RS03075 0.66 +4.6 646,844 + ABZR87_RS03075 0.68 +5.1 646,845 - ABZR87_RS03075 0.68 +5.5 647,166 + +4.6 647,166 + +5.1 647,166 + +4.3 647,167 - +5.1 647,185 - +4.7 647,228 + +0.4 647,228 + +0.3 647,229 - -1.4 647,229 - -0.0 647,260 + +1.1 647,260 + +0.6 647,260 + -0.6 647,260 + +1.6 647,260 + +0.7 647,260 + -1.7 647,260 + -2.1 647,261 - +0.5 647,261 - +0.3 647,261 - -0.3 647,261 - +1.4 647,261 - +0.5 647,261 - -0.2 647,261 - +0.6 647,261 - +0.3 647,261 - -1.7 647,261 - +0.6 647,261 - +1.6 647,330 + +0.1 647,330 + -1.3 647,330 + -0.7 647,330 + -1.4 647,330 + +0.9 647,330 + -1.2 647,331 - +0.2 647,331 - +0.3 647,331 - -0.8 647,331 - -0.9 647,345 + -0.6 647,345 + -0.8 647,345 + +0.2 647,345 + +0.3 647,346 - -0.4 647,346 - -0.2 647,346 - -1.6 647,346 - -0.7 647,346 - +0.3 647,354 + -0.1 647,354 + +0.5 647,354 + +1.1 647,355 - +0.6 647,355 - -0.7 647,355 - +1.1 647,355 - +0.2 647,355 - +0.1 647,355 - -2.7 647,355 - -0.9 647,480 + ABZR87_RS03080 0.17 -0.6 647,480 + ABZR87_RS03080 0.17 -0.3 647,481 - ABZR87_RS03080 0.17 -0.5 647,481 - ABZR87_RS03080 0.17 +0.2 647,481 - ABZR87_RS03080 0.17 +0.3 647,571 - ABZR87_RS03080 0.24 -0.8 647,571 - ABZR87_RS03080 0.24 +2.9 647,666 + ABZR87_RS03080 0.32 +0.9 647,667 - ABZR87_RS03080 0.32 +0.3 647,777 + ABZR87_RS03080 0.40 +0.2 647,777 + ABZR87_RS03080 0.40 -1.6 647,777 + ABZR87_RS03080 0.40 -1.1 647,777 + ABZR87_RS03080 0.40 -0.8 647,778 - ABZR87_RS03080 0.40 -0.1 647,778 - ABZR87_RS03080 0.40 -0.1 648,008 + ABZR87_RS03080 0.58 +0.3 648,008 + ABZR87_RS03080 0.58 +0.9 648,008 + ABZR87_RS03080 0.58 +0.5 648,008 + ABZR87_RS03080 0.58 -0.2 648,024 - ABZR87_RS03080 0.59 +0.3 648,024 - ABZR87_RS03080 0.59 -0.1 648,176 - ABZR87_RS03080 0.71 -0.4 648,176 - ABZR87_RS03080 0.71 +0.6 648,200 + ABZR87_RS03080 0.73 -1.3 648,278 + ABZR87_RS03080 0.79 +0.9 648,278 + ABZR87_RS03080 0.79 -0.6 648,278 + ABZR87_RS03080 0.79 +0.5 648,278 + ABZR87_RS03080 0.79 -0.9 648,279 - ABZR87_RS03080 0.79 +0.5 648,279 - ABZR87_RS03080 0.79 +0.1 648,279 - ABZR87_RS03080 0.79 +0.5 648,287 + ABZR87_RS03080 0.79 -1.2 648,287 + ABZR87_RS03080 0.79 -0.3 648,287 + ABZR87_RS03080 0.79 +0.0 648,287 + ABZR87_RS03080 0.79 -1.5 648,287 + ABZR87_RS03080 0.79 +0.1 648,288 - ABZR87_RS03080 0.79 -0.1 648,288 - ABZR87_RS03080 0.79 +0.2 648,288 - ABZR87_RS03080 0.79 +0.4 648,288 - ABZR87_RS03080 0.79 +0.4 648,288 - ABZR87_RS03080 0.79 +1.0 648,288 - ABZR87_RS03080 0.79 -0.3 648,289 + ABZR87_RS03080 0.79 +0.7 648,289 + ABZR87_RS03080 0.79 +0.4 648,290 - ABZR87_RS03080 0.79 -1.1 648,290 - ABZR87_RS03080 0.79 +0.5 648,362 + ABZR87_RS03080 0.85 +3.0 648,363 - ABZR87_RS03080 0.85 -2.3 648,363 - ABZR87_RS03080 0.85 +1.6 648,363 - ABZR87_RS03080 0.85 +0.6 648,363 - ABZR87_RS03080 0.85 -0.0 648,490 + -0.1 648,490 + -0.1 648,491 - -0.5 648,491 - -1.5 648,554 + +0.1 648,554 + +1.5 648,555 - -1.0 648,555 - +0.5 648,555 - -0.2 648,854 + +0.2 648,854 + -0.5 648,854 + -0.9 648,854 + -0.1 649,268 + -0.6 649,268 + -0.7 649,269 - +0.0 649,269 - -0.7 649,269 - +0.1 649,269 - -1.9 649,372 - ABZR87_RS03085 0.14 +0.7 649,372 - ABZR87_RS03085 0.14 -0.8 649,550 + ABZR87_RS03085 0.30 +0.2 649,551 - ABZR87_RS03085 0.30 +0.5
Or see this region's nucleotide sequence