Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03050 and ABZR87_RS03055 are separated by 113 nucleotides ABZR87_RS03055 and ABZR87_RS03060 are separated by 68 nucleotides ABZR87_RS03060 and ABZR87_RS03065 are separated by 191 nucleotides
ABZR87_RS03050: ABZR87_RS03050 - ABC transporter substrate-binding protein, at 639,213 to 640,958
_RS03050
ABZR87_RS03055: ABZR87_RS03055 - glycerol kinase GlpK, at 641,072 to 642,568
_RS03055
ABZR87_RS03060: ABZR87_RS03060 - hypothetical protein, at 642,637 to 643,002
_RS03060
ABZR87_RS03065: ABZR87_RS03065 - DUF1415 family protein, at 643,194 to 643,820
_RS03065
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 640.162 kb on - strand, within ABZR87_RS03050 at 640.162 kb on - strand, within ABZR87_RS03050 at 640.162 kb on - strand, within ABZR87_RS03050 at 640.162 kb on - strand, within ABZR87_RS03050 at 640.176 kb on + strand, within ABZR87_RS03050 at 640.176 kb on + strand, within ABZR87_RS03050 at 640.176 kb on + strand, within ABZR87_RS03050 at 640.176 kb on + strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.177 kb on - strand, within ABZR87_RS03050 at 640.197 kb on + strand, within ABZR87_RS03050 at 640.198 kb on - strand, within ABZR87_RS03050 at 640.198 kb on - strand, within ABZR87_RS03050 at 640.198 kb on - strand, within ABZR87_RS03050 at 640.198 kb on - strand, within ABZR87_RS03050 at 640.198 kb on - strand, within ABZR87_RS03050 at 640.285 kb on - strand, within ABZR87_RS03050 at 640.476 kb on + strand, within ABZR87_RS03050 at 640.476 kb on + strand, within ABZR87_RS03050 at 640.477 kb on - strand, within ABZR87_RS03050 at 640.566 kb on + strand, within ABZR87_RS03050 at 640.566 kb on + strand, within ABZR87_RS03050 at 640.566 kb on + strand, within ABZR87_RS03050 at 640.567 kb on - strand, within ABZR87_RS03050 at 640.567 kb on - strand, within ABZR87_RS03050 at 640.590 kb on + strand, within ABZR87_RS03050 at 640.590 kb on + strand, within ABZR87_RS03050 at 640.611 kb on + strand, within ABZR87_RS03050 at 640.612 kb on - strand, within ABZR87_RS03050 at 640.612 kb on - strand, within ABZR87_RS03050 at 640.915 kb on - strand at 640.915 kb on - strand at 640.915 kb on - strand at 640.999 kb on + strand at 641.000 kb on - strand at 641.020 kb on - strand at 641.071 kb on + strand at 641.078 kb on + strand at 641.078 kb on + strand at 641.078 kb on + strand at 641.078 kb on + strand at 641.079 kb on - strand at 641.079 kb on - strand at 641.436 kb on + strand, within ABZR87_RS03055 at 641.436 kb on + strand, within ABZR87_RS03055 at 641.436 kb on + strand, within ABZR87_RS03055 at 641.436 kb on + strand, within ABZR87_RS03055 at 641.437 kb on - strand, within ABZR87_RS03055 at 641.437 kb on - strand, within ABZR87_RS03055 at 641.437 kb on - strand, within ABZR87_RS03055 at 641.468 kb on + strand, within ABZR87_RS03055 at 641.469 kb on - strand, within ABZR87_RS03055 at 641.613 kb on + strand, within ABZR87_RS03055 at 641.614 kb on - strand, within ABZR87_RS03055 at 641.855 kb on + strand, within ABZR87_RS03055 at 641.855 kb on + strand, within ABZR87_RS03055 at 641.855 kb on + strand, within ABZR87_RS03055 at 641.855 kb on + strand, within ABZR87_RS03055 at 641.856 kb on - strand, within ABZR87_RS03055 at 641.856 kb on - strand, within ABZR87_RS03055 at 641.856 kb on - strand, within ABZR87_RS03055 at 641.856 kb on - strand, within ABZR87_RS03055 at 641.856 kb on - strand, within ABZR87_RS03055 at 641.961 kb on - strand, within ABZR87_RS03055 at 641.961 kb on - strand, within ABZR87_RS03055 at 642.396 kb on - strand, within ABZR87_RS03055 at 642.396 kb on - strand, within ABZR87_RS03055 at 642.396 kb on - strand, within ABZR87_RS03055 at 642.422 kb on + strand at 642.423 kb on - strand at 642.423 kb on - strand at 642.638 kb on + strand at 642.638 kb on + strand at 642.638 kb on + strand at 642.638 kb on + strand at 642.638 kb on + strand at 642.638 kb on + strand at 642.639 kb on - strand at 642.639 kb on - strand at 642.639 kb on - strand at 642.639 kb on - strand at 642.639 kb on - strand at 642.639 kb on - strand at 642.764 kb on + strand, within ABZR87_RS03060 at 642.764 kb on + strand, within ABZR87_RS03060 at 642.764 kb on + strand, within ABZR87_RS03060 at 642.764 kb on + strand, within ABZR87_RS03060 at 642.764 kb on + strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.765 kb on - strand, within ABZR87_RS03060 at 642.797 kb on + strand, within ABZR87_RS03060 at 642.797 kb on + strand, within ABZR87_RS03060 at 642.797 kb on + strand, within ABZR87_RS03060 at 642.797 kb on + strand, within ABZR87_RS03060 at 642.798 kb on - strand, within ABZR87_RS03060 at 642.798 kb on - strand, within ABZR87_RS03060 at 642.798 kb on - strand, within ABZR87_RS03060 at 643.020 kb on + strand at 643.048 kb on + strand at 643.048 kb on + strand at 643.048 kb on + strand at 643.049 kb on - strand at 643.049 kb on - strand at 643.049 kb on - strand at 643.160 kb on + strand at 643.160 kb on + strand at 643.189 kb on - strand at 643.372 kb on - strand, within ABZR87_RS03065 at 643.540 kb on + strand, within ABZR87_RS03065 at 643.541 kb on - strand, within ABZR87_RS03065 at 643.558 kb on - strand, within ABZR87_RS03065
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 640,162 - ABZR87_RS03050 0.54 +0.3 640,162 - ABZR87_RS03050 0.54 -1.9 640,162 - ABZR87_RS03050 0.54 -0.1 640,162 - ABZR87_RS03050 0.54 -0.2 640,176 + ABZR87_RS03050 0.55 +0.1 640,176 + ABZR87_RS03050 0.55 +0.6 640,176 + ABZR87_RS03050 0.55 -0.9 640,176 + ABZR87_RS03050 0.55 -0.7 640,177 - ABZR87_RS03050 0.55 -1.3 640,177 - ABZR87_RS03050 0.55 +1.1 640,177 - ABZR87_RS03050 0.55 -1.3 640,177 - ABZR87_RS03050 0.55 -0.6 640,177 - ABZR87_RS03050 0.55 -0.9 640,177 - ABZR87_RS03050 0.55 -1.0 640,197 + ABZR87_RS03050 0.56 -0.2 640,198 - ABZR87_RS03050 0.56 -0.5 640,198 - ABZR87_RS03050 0.56 +0.1 640,198 - ABZR87_RS03050 0.56 -0.2 640,198 - ABZR87_RS03050 0.56 -0.4 640,198 - ABZR87_RS03050 0.56 +0.0 640,285 - ABZR87_RS03050 0.61 -0.5 640,476 + ABZR87_RS03050 0.72 -0.7 640,476 + ABZR87_RS03050 0.72 -0.9 640,477 - ABZR87_RS03050 0.72 +0.0 640,566 + ABZR87_RS03050 0.77 -1.0 640,566 + ABZR87_RS03050 0.77 -0.9 640,566 + ABZR87_RS03050 0.77 +0.2 640,567 - ABZR87_RS03050 0.78 -1.7 640,567 - ABZR87_RS03050 0.78 -1.0 640,590 + ABZR87_RS03050 0.79 +1.1 640,590 + ABZR87_RS03050 0.79 -0.1 640,611 + ABZR87_RS03050 0.80 +1.3 640,612 - ABZR87_RS03050 0.80 -1.4 640,612 - ABZR87_RS03050 0.80 -0.9 640,915 - -0.8 640,915 - -0.5 640,915 - -0.9 640,999 + +4.7 641,000 - -0.1 641,020 - +0.5 641,071 + -0.3 641,078 + +0.5 641,078 + +0.5 641,078 + -0.1 641,078 + +0.6 641,079 - -0.3 641,079 - +0.0 641,436 + ABZR87_RS03055 0.24 +0.3 641,436 + ABZR87_RS03055 0.24 -0.7 641,436 + ABZR87_RS03055 0.24 -0.0 641,436 + ABZR87_RS03055 0.24 -1.6 641,437 - ABZR87_RS03055 0.24 -1.5 641,437 - ABZR87_RS03055 0.24 -0.7 641,437 - ABZR87_RS03055 0.24 -0.9 641,468 + ABZR87_RS03055 0.26 -1.1 641,469 - ABZR87_RS03055 0.27 -1.5 641,613 + ABZR87_RS03055 0.36 -0.9 641,614 - ABZR87_RS03055 0.36 -0.5 641,855 + ABZR87_RS03055 0.52 -1.5 641,855 + ABZR87_RS03055 0.52 +0.3 641,855 + ABZR87_RS03055 0.52 +0.5 641,855 + ABZR87_RS03055 0.52 -0.9 641,856 - ABZR87_RS03055 0.52 +1.0 641,856 - ABZR87_RS03055 0.52 -0.5 641,856 - ABZR87_RS03055 0.52 -1.7 641,856 - ABZR87_RS03055 0.52 -0.7 641,856 - ABZR87_RS03055 0.52 -2.3 641,961 - ABZR87_RS03055 0.59 -1.7 641,961 - ABZR87_RS03055 0.59 +0.0 642,396 - ABZR87_RS03055 0.88 -0.3 642,396 - ABZR87_RS03055 0.88 +0.6 642,396 - ABZR87_RS03055 0.88 +1.5 642,422 + +0.2 642,423 - -0.6 642,423 - +0.5 642,638 + +0.7 642,638 + -0.0 642,638 + -0.0 642,638 + +0.3 642,638 + -0.9 642,638 + +1.0 642,639 - +0.7 642,639 - +0.9 642,639 - -0.6 642,639 - +0.9 642,639 - +0.9 642,639 - +0.2 642,764 + ABZR87_RS03060 0.35 +0.0 642,764 + ABZR87_RS03060 0.35 +0.1 642,764 + ABZR87_RS03060 0.35 +0.5 642,764 + ABZR87_RS03060 0.35 +0.1 642,764 + ABZR87_RS03060 0.35 -0.1 642,765 - ABZR87_RS03060 0.35 -0.5 642,765 - ABZR87_RS03060 0.35 -0.2 642,765 - ABZR87_RS03060 0.35 -0.3 642,765 - ABZR87_RS03060 0.35 +0.3 642,765 - ABZR87_RS03060 0.35 +0.6 642,765 - ABZR87_RS03060 0.35 -0.3 642,797 + ABZR87_RS03060 0.44 -0.0 642,797 + ABZR87_RS03060 0.44 +0.2 642,797 + ABZR87_RS03060 0.44 +1.0 642,797 + ABZR87_RS03060 0.44 +0.1 642,798 - ABZR87_RS03060 0.44 +0.3 642,798 - ABZR87_RS03060 0.44 +0.4 642,798 - ABZR87_RS03060 0.44 +0.9 643,020 + -1.7 643,048 + -1.4 643,048 + -1.5 643,048 + -0.2 643,049 - +0.5 643,049 - +0.4 643,049 - +0.1 643,160 + -0.4 643,160 + +0.5 643,189 - -1.2 643,372 - ABZR87_RS03065 0.28 -1.0 643,540 + ABZR87_RS03065 0.55 -0.2 643,541 - ABZR87_RS03065 0.55 +0.8 643,558 - ABZR87_RS03065 0.58 +0.2
Or see this region's nucleotide sequence