Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02475 and ABZR87_RS02480 are separated by 75 nucleotides ABZR87_RS02480 and ABZR87_RS02485 are separated by 8 nucleotides ABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotides ABZR87_RS02490 and ABZR87_RS02495 overlap by 4 nucleotides
ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746
_RS02475
ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475
_RS02480
ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107
_RS02485
ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753
_RS02490
ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874
_RS02495
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.746 kb on + strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.906 kb on - strand, within ABZR87_RS02480 at 526.989 kb on - strand, within ABZR87_RS02480 at 526.995 kb on + strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 526.996 kb on - strand, within ABZR87_RS02480 at 527.007 kb on - strand, within ABZR87_RS02480 at 527.007 kb on - strand, within ABZR87_RS02480 at 527.012 kb on + strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.013 kb on - strand, within ABZR87_RS02480 at 527.175 kb on - strand, within ABZR87_RS02480 at 527.470 kb on - strand at 527.470 kb on - strand at 527.480 kb on + strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.481 kb on - strand at 527.485 kb on + strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.497 kb on - strand at 527.905 kb on - strand, within ABZR87_RS02485 at 528.165 kb on - strand at 528.165 kb on - strand at 528.165 kb on - strand at 528.857 kb on + strand at 528.858 kb on - strand at 528.869 kb on + strand, within ABZR87_RS02495 at 528.870 kb on - strand, within ABZR87_RS02495 at 529.095 kb on - strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.097 kb on - strand, within ABZR87_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 526,746 + +3.7 526,747 - +3.7 526,747 - +2.7 526,747 - +1.3 526,747 - +1.7 526,747 - +1.3 526,906 - ABZR87_RS02480 0.13 +3.7 526,989 - ABZR87_RS02480 0.26 +3.7 526,995 + ABZR87_RS02480 0.26 -0.5 526,996 - ABZR87_RS02480 0.27 +3.7 526,996 - ABZR87_RS02480 0.27 +1.3 526,996 - ABZR87_RS02480 0.27 +3.7 526,996 - ABZR87_RS02480 0.27 +3.7 526,996 - ABZR87_RS02480 0.27 +2.7 527,007 - ABZR87_RS02480 0.28 +3.7 527,007 - ABZR87_RS02480 0.28 +2.7 527,012 + ABZR87_RS02480 0.29 +3.7 527,013 - ABZR87_RS02480 0.29 +3.7 527,013 - ABZR87_RS02480 0.29 +3.7 527,013 - ABZR87_RS02480 0.29 +3.7 527,013 - ABZR87_RS02480 0.29 +3.7 527,175 - ABZR87_RS02480 0.54 +3.7 527,470 - +1.7 527,470 - +1.3 527,480 + +2.7 527,481 - +1.3 527,481 - +0.2 527,481 - +0.9 527,481 - -0.9 527,481 - +0.5 527,481 - +0.4 527,481 - +0.4 527,481 - -0.7 527,485 + +2.1 527,486 - -1.5 527,486 - -2.1 527,486 - +0.5 527,486 - +0.4 527,486 - -0.6 527,497 - +0.7 527,905 - ABZR87_RS02485 0.67 -1.1 528,165 - -2.0 528,165 - -1.5 528,165 - -0.4 528,857 + -0.7 528,858 - +0.3 528,869 + ABZR87_RS02495 0.11 +2.3 528,870 - ABZR87_RS02495 0.11 -0.6 529,095 - ABZR87_RS02495 0.31 +1.4 529,096 + ABZR87_RS02495 0.31 -0.6 529,096 + ABZR87_RS02495 0.31 -0.7 529,096 + ABZR87_RS02495 0.31 +0.3 529,096 + ABZR87_RS02495 0.31 -0.0 529,097 - ABZR87_RS02495 0.31 +0.0
Or see this region's nucleotide sequence