Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02375

Experiment: rhizosphere sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02365 and ABZR87_RS02370 are separated by 72 nucleotidesABZR87_RS02370 and ABZR87_RS02375 are separated by 150 nucleotidesABZR87_RS02375 and ABZR87_RS02380 are separated by 37 nucleotides ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356 _RS02365 ABZR87_RS02370: ABZR87_RS02370 - glutathione S-transferase N-terminal domain-containing protein, at 506,429 to 507,040 _RS02370 ABZR87_RS02375: ABZR87_RS02375 - cytochrome c1, at 507,191 to 507,934 _RS02375 ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375 _RS02380 Position (kb) 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 506.280 kb on + strand, within ABZR87_RS02365at 506.280 kb on + strand, within ABZR87_RS02365at 506.281 kb on - strand, within ABZR87_RS02365at 506.313 kb on + strandat 506.313 kb on + strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.314 kb on - strandat 506.331 kb on + strandat 506.331 kb on + strandat 506.332 kb on - strandat 507.087 kb on - strandat 507.087 kb on - strandat 507.087 kb on - strandat 507.144 kb on - strandat 507.144 kb on - strandat 507.144 kb on - strandat 507.166 kb on - strandat 507.193 kb on - strandat 507.211 kb on - strandat 507.264 kb on - strandat 507.264 kb on - strandat 507.321 kb on + strand, within ABZR87_RS02375at 507.321 kb on + strand, within ABZR87_RS02375at 507.321 kb on + strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.322 kb on - strand, within ABZR87_RS02375at 507.351 kb on + strand, within ABZR87_RS02375at 507.352 kb on - strand, within ABZR87_RS02375at 507.355 kb on - strand, within ABZR87_RS02375at 507.441 kb on + strand, within ABZR87_RS02375at 507.543 kb on + strand, within ABZR87_RS02375at 507.543 kb on + strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.544 kb on - strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.558 kb on + strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.559 kb on - strand, within ABZR87_RS02375at 507.564 kb on + strand, within ABZR87_RS02375at 507.564 kb on + strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.565 kb on - strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.747 kb on + strand, within ABZR87_RS02375at 507.748 kb on - strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.783 kb on + strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.784 kb on - strand, within ABZR87_RS02375at 507.970 kb on + strandat 507.971 kb on - strandat 508.060 kb on + strandat 508.060 kb on + strandat 508.061 kb on - strandat 508.123 kb on + strand, within ABZR87_RS02380at 508.124 kb on - strand, within ABZR87_RS02380at 508.441 kb on + strand, within ABZR87_RS02380at 508.442 kb on - strand, within ABZR87_RS02380at 508.442 kb on - strand, within ABZR87_RS02380at 508.528 kb on + strand, within ABZR87_RS02380at 508.528 kb on + strand, within ABZR87_RS02380at 508.529 kb on - strand, within ABZR87_RS02380at 508.529 kb on - strand, within ABZR87_RS02380at 508.613 kb on - strand, within ABZR87_RS02380at 508.615 kb on + strand, within ABZR87_RS02380at 508.615 kb on + strand, within ABZR87_RS02380at 508.616 kb on - strand, within ABZR87_RS02380at 508.617 kb on - strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.810 kb on + strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.811 kb on - strand, within ABZR87_RS02380at 508.895 kb on - strand, within ABZR87_RS02380at 508.895 kb on - strand, within ABZR87_RS02380at 508.895 kb on - strand, within ABZR87_RS02380at 508.921 kb on + strand, within ABZR87_RS02380at 508.921 kb on + strand, within ABZR87_RS02380at 508.922 kb on - strand, within ABZR87_RS02380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB
remove
506,280 + ABZR87_RS02365 0.85 -0.4
506,280 + ABZR87_RS02365 0.85 -0.5
506,281 - ABZR87_RS02365 0.85 +1.4
506,313 + +0.0
506,313 + -0.1
506,314 - -1.4
506,314 - +1.0
506,314 - -0.8
506,314 - +2.4
506,331 + +0.7
506,331 + +0.4
506,332 - +0.3
507,087 - -0.4
507,087 - +1.1
507,087 - -0.3
507,144 - +0.9
507,144 - -0.9
507,144 - -0.0
507,166 - -0.3
507,193 - +0.0
507,211 - -0.3
507,264 - -2.0
507,264 - -1.9
507,321 + ABZR87_RS02375 0.17 +0.7
507,321 + ABZR87_RS02375 0.17 -0.1
507,321 + ABZR87_RS02375 0.17 +0.2
507,322 - ABZR87_RS02375 0.18 -0.7
507,322 - ABZR87_RS02375 0.18 -2.5
507,322 - ABZR87_RS02375 0.18 +1.0
507,322 - ABZR87_RS02375 0.18 -2.4
507,322 - ABZR87_RS02375 0.18 -1.0
507,322 - ABZR87_RS02375 0.18 -1.7
507,351 + ABZR87_RS02375 0.22 -0.2
507,352 - ABZR87_RS02375 0.22 -2.2
507,355 - ABZR87_RS02375 0.22 -1.1
507,441 + ABZR87_RS02375 0.34 -1.1
507,543 + ABZR87_RS02375 0.47 -1.1
507,543 + ABZR87_RS02375 0.47 -1.9
507,544 - ABZR87_RS02375 0.47 -2.7
507,544 - ABZR87_RS02375 0.47 -1.4
507,544 - ABZR87_RS02375 0.47 -1.4
507,544 - ABZR87_RS02375 0.47 -1.3
507,558 + ABZR87_RS02375 0.49 -1.5
507,558 + ABZR87_RS02375 0.49 -1.1
507,558 + ABZR87_RS02375 0.49 -0.2
507,558 + ABZR87_RS02375 0.49 +2.7
507,558 + ABZR87_RS02375 0.49 +0.4
507,559 - ABZR87_RS02375 0.49 -0.9
507,559 - ABZR87_RS02375 0.49 +0.3
507,559 - ABZR87_RS02375 0.49 -0.6
507,559 - ABZR87_RS02375 0.49 -2.0
507,564 + ABZR87_RS02375 0.50 -0.4
507,564 + ABZR87_RS02375 0.50 -0.3
507,565 - ABZR87_RS02375 0.50 -1.9
507,565 - ABZR87_RS02375 0.50 -2.0
507,565 - ABZR87_RS02375 0.50 -0.4
507,565 - ABZR87_RS02375 0.50 +0.3
507,565 - ABZR87_RS02375 0.50 -0.2
507,747 + ABZR87_RS02375 0.75 +0.7
507,747 + ABZR87_RS02375 0.75 -2.2
507,747 + ABZR87_RS02375 0.75 -2.2
507,747 + ABZR87_RS02375 0.75 -2.9
507,747 + ABZR87_RS02375 0.75 -1.0
507,748 - ABZR87_RS02375 0.75 -2.9
507,783 + ABZR87_RS02375 0.80 -1.1
507,783 + ABZR87_RS02375 0.80 -1.9
507,783 + ABZR87_RS02375 0.80 -1.4
507,784 - ABZR87_RS02375 0.80 -0.2
507,784 - ABZR87_RS02375 0.80 -1.5
507,784 - ABZR87_RS02375 0.80 -1.3
507,784 - ABZR87_RS02375 0.80 -2.1
507,784 - ABZR87_RS02375 0.80 -1.3
507,970 + -1.1
507,971 - -0.1
508,060 + -2.0
508,060 + -1.4
508,061 - -1.8
508,123 + ABZR87_RS02380 0.11 -1.3
508,124 - ABZR87_RS02380 0.11 +0.1
508,441 + ABZR87_RS02380 0.33 -2.1
508,442 - ABZR87_RS02380 0.33 -1.2
508,442 - ABZR87_RS02380 0.33 -2.3
508,528 + ABZR87_RS02380 0.40 -1.9
508,528 + ABZR87_RS02380 0.40 -1.9
508,529 - ABZR87_RS02380 0.40 -2.1
508,529 - ABZR87_RS02380 0.40 -1.1
508,613 - ABZR87_RS02380 0.46 -0.7
508,615 + ABZR87_RS02380 0.46 +0.4
508,615 + ABZR87_RS02380 0.46 -2.4
508,616 - ABZR87_RS02380 0.46 -2.0
508,617 - ABZR87_RS02380 0.46 +0.7
508,810 + ABZR87_RS02380 0.60 -1.2
508,810 + ABZR87_RS02380 0.60 -1.2
508,810 + ABZR87_RS02380 0.60 -0.5
508,810 + ABZR87_RS02380 0.60 +1.7
508,810 + ABZR87_RS02380 0.60 -1.7
508,810 + ABZR87_RS02380 0.60 -1.2
508,810 + ABZR87_RS02380 0.60 -1.9
508,810 + ABZR87_RS02380 0.60 -1.0
508,811 - ABZR87_RS02380 0.60 -1.3
508,811 - ABZR87_RS02380 0.60 -1.9
508,811 - ABZR87_RS02380 0.60 -0.2
508,811 - ABZR87_RS02380 0.60 -1.5
508,811 - ABZR87_RS02380 0.60 -0.2
508,811 - ABZR87_RS02380 0.60 -1.3
508,895 - ABZR87_RS02380 0.66 -0.7
508,895 - ABZR87_RS02380 0.66 -0.7
508,895 - ABZR87_RS02380 0.66 -0.9
508,921 + ABZR87_RS02380 0.68 -0.5
508,921 + ABZR87_RS02380 0.68 -1.8
508,922 - ABZR87_RS02380 0.68 -1.5

Or see this region's nucleotide sequence