Experiment: rhizosphere sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotides ABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotides
ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487
_RS00375
ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134
_RS00380
ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202
_RS00385
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.603 kb on - strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.619 kb on + strand, within ABZR87_RS00380 at 78.145 kb on + strand at 78.146 kb on - strand at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.532 kb on + strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.554 kb on + strand at 78.555 kb on - strand at 78.941 kb on + strand, within ABZR87_RS00385 at 78.942 kb on - strand, within ABZR87_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 5; outgrowth in LB remove 76,598 + ABZR87_RS00375 0.36 -0.1 76,598 + ABZR87_RS00375 0.36 -0.5 76,598 + ABZR87_RS00375 0.36 -0.0 76,599 - ABZR87_RS00375 0.36 -0.2 76,599 - ABZR87_RS00375 0.36 -0.2 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 -0.3 76,599 - ABZR87_RS00375 0.36 -0.3 76,599 - ABZR87_RS00375 0.36 -0.2 76,603 - ABZR87_RS00375 0.37 +0.2 77,258 + ABZR87_RS00375 0.84 -0.8 77,258 + ABZR87_RS00375 0.84 +0.1 77,259 - ABZR87_RS00375 0.84 -0.9 77,259 - ABZR87_RS00375 0.84 +0.0 77,259 - ABZR87_RS00375 0.84 +0.7 77,259 - ABZR87_RS00375 0.84 -0.2 77,619 + ABZR87_RS00380 0.21 -0.4 78,145 + +0.3 78,146 - +1.3 78,325 + +0.5 78,326 + +2.7 78,326 + +1.4 78,326 + +0.5 78,326 + +1.1 78,326 + -0.2 78,326 + +0.9 78,326 + +0.4 78,326 + -0.3 78,326 + +0.2 78,326 + -0.8 78,326 + +1.0 78,326 + +0.2 78,326 + +1.3 78,327 - +1.2 78,327 - +1.7 78,327 - +2.3 78,327 - +1.3 78,327 - +2.4 78,327 - +2.0 78,327 - +1.7 78,425 - +1.2 78,453 + +2.0 78,454 - +1.1 78,454 - +2.7 78,454 - +2.9 78,497 + +2.1 78,497 + +1.6 78,497 + +1.5 78,498 - +1.6 78,498 - +1.9 78,498 - +5.9 78,532 + +1.3 78,533 - +1.7 78,533 - +0.7 78,533 - +1.7 78,533 - +1.8 78,554 + +1.9 78,555 - +1.9 78,941 + ABZR87_RS00385 0.61 +1.1 78,942 - ABZR87_RS00385 0.61 +1.5
Or see this region's nucleotide sequence