Experiment: Hyaluronic from Streptococcus equi (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0322 and BT0323 are separated by 125 nucleotides BT0323 and BT0324 are separated by 23 nucleotides BT0324 and BT0325 are separated by 25 nucleotides BT0325 and BT0326 overlap by 4 nucleotides
BT0322: BT0322 - putative oxidoreductase (NCBI ptt file), at 388,527 to 389,501
BT0322
BT0323: BT0323 - hypothetical protein (NCBI ptt file), at 389,627 to 390,529
BT0323
BT0324: BT0324 - hypothetical protein (NCBI ptt file), at 390,553 to 391,002
BT0324
BT0325: BT0325 - hypothetical protein (NCBI ptt file), at 391,028 to 391,489
BT0325
BT0326: BT0326 - putative RNA polymerase ECF-type sigma factor (NCBI ptt file), at 391,486 to 392,007
BT0326
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 388.740 kb on - strand, within BT0322 at 388.746 kb on - strand, within BT0322 at 388.923 kb on - strand, within BT0322 at 389.058 kb on + strand, within BT0322 at 389.072 kb on + strand, within BT0322 at 389.169 kb on - strand, within BT0322 at 389.175 kb on - strand, within BT0322 at 389.227 kb on + strand, within BT0322 at 389.227 kb on + strand, within BT0322 at 389.513 kb on + strand at 389.513 kb on + strand at 389.514 kb on - strand at 389.517 kb on - strand at 389.522 kb on + strand at 389.635 kb on - strand at 389.716 kb on - strand at 389.716 kb on - strand at 389.759 kb on - strand, within BT0323 at 389.762 kb on + strand, within BT0323 at 389.960 kb on + strand, within BT0323 at 389.961 kb on - strand, within BT0323 at 390.087 kb on + strand, within BT0323 at 390.088 kb on - strand, within BT0323 at 390.088 kb on - strand, within BT0323 at 390.451 kb on + strand at 390.451 kb on + strand at 390.516 kb on - strand at 390.619 kb on - strand, within BT0324 at 391.009 kb on - strand at 391.307 kb on - strand, within BT0325 at 391.307 kb on - strand, within BT0325 at 391.311 kb on - strand, within BT0325
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi (C) remove 388,740 - BT0322 0.22 +2.2 388,746 - BT0322 0.22 +0.4 388,923 - BT0322 0.41 +0.9 389,058 + BT0322 0.54 -1.0 389,072 + BT0322 0.56 -1.2 389,169 - BT0322 0.66 -1.6 389,175 - BT0322 0.66 -0.4 389,227 + BT0322 0.72 -1.2 389,227 + BT0322 0.72 -0.4 389,513 + -1.4 389,513 + -2.5 389,514 - +1.6 389,517 - +0.0 389,522 + -0.7 389,635 - -0.8 389,716 - -0.1 389,716 - -0.5 389,759 - BT0323 0.15 -1.7 389,762 + BT0323 0.15 -1.2 389,960 + BT0323 0.37 -1.0 389,961 - BT0323 0.37 -1.4 390,087 + BT0323 0.51 -0.1 390,088 - BT0323 0.51 -2.6 390,088 - BT0323 0.51 -2.9 390,451 + -0.6 390,451 + -1.2 390,516 - -1.2 390,619 - BT0324 0.15 +0.0 391,009 - -0.2 391,307 - BT0325 0.60 -0.2 391,307 - BT0325 0.60 +0.0 391,311 - BT0325 0.61 +2.9
Or see this region's nucleotide sequence