Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3610

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3608 and Rru_A3609 are separated by 209 nucleotidesRru_A3609 and Rru_A3610 are separated by 115 nucleotidesRru_A3610 and Rru_A3611 are separated by 154 nucleotidesRru_A3611 and Rru_A3612 overlap by 8 nucleotides Rru_A3608: Rru_A3608 - hypothetical protein (NCBI), at 4,148,332 to 4,148,991 _A3608 Rru_A3609: Rru_A3609 - FxsA cytoplasmic membrane protein (NCBI), at 4,149,201 to 4,149,764 _A3609 Rru_A3610: Rru_A3610 - protein export chaperone SecB (NCBI), at 4,149,880 to 4,150,362 _A3610 Rru_A3611: Rru_A3611 - DNA polymerase III, epsilon subunit (NCBI), at 4,150,517 to 4,151,209 _A3611 Rru_A3612: Rru_A3612 - Dephospho-CoA kinase (NCBI), at 4,151,202 to 4,151,891 _A3612 Position (kb) 4149 4150 4151Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4149.037 kb on - strandat 4149.124 kb on - strandat 4149.155 kb on - strandat 4149.155 kb on - strandat 4149.155 kb on - strandat 4149.155 kb on - strandat 4149.200 kb on + strandat 4149.200 kb on + strandat 4149.200 kb on + strandat 4149.200 kb on + strandat 4149.200 kb on + strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.201 kb on - strandat 4149.722 kb on + strandat 4149.722 kb on + strandat 4149.722 kb on + strandat 4149.722 kb on + strandat 4149.723 kb on - strandat 4149.762 kb on + strandat 4149.763 kb on - strandat 4149.763 kb on - strandat 4149.763 kb on - strandat 4149.820 kb on + strandat 4149.820 kb on + strandat 4149.940 kb on + strand, within Rru_A3610at 4149.940 kb on + strand, within Rru_A3610at 4149.940 kb on + strand, within Rru_A3610at 4149.941 kb on - strand, within Rru_A3610at 4149.941 kb on - strand, within Rru_A3610at 4149.941 kb on - strand, within Rru_A3610at 4149.941 kb on - strand, within Rru_A3610at 4150.132 kb on + strand, within Rru_A3610at 4150.133 kb on - strand, within Rru_A3610at 4150.170 kb on + strand, within Rru_A3610at 4150.171 kb on - strand, within Rru_A3610at 4150.300 kb on + strand, within Rru_A3610at 4150.300 kb on + strand, within Rru_A3610at 4150.301 kb on - strand, within Rru_A3610at 4150.301 kb on - strand, within Rru_A3610at 4150.518 kb on + strandat 4150.518 kb on + strandat 4150.519 kb on - strandat 4150.519 kb on - strandat 4151.219 kb on - strandat 4151.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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4,149,037 - +0.4
4,149,124 - -2.3
4,149,155 - +1.0
4,149,155 - +1.1
4,149,155 - -1.3
4,149,155 - -1.5
4,149,200 + -1.0
4,149,200 + -3.2
4,149,200 + -3.6
4,149,200 + +0.9
4,149,200 + -1.9
4,149,201 - -0.9
4,149,201 - +0.4
4,149,201 - -4.2
4,149,201 - +1.3
4,149,201 - -0.0
4,149,201 - +0.2
4,149,201 - -3.5
4,149,722 + +0.5
4,149,722 + -3.4
4,149,722 + -3.6
4,149,722 + -1.0
4,149,723 - -1.6
4,149,762 + +0.7
4,149,763 - -0.9
4,149,763 - -0.4
4,149,763 - -0.1
4,149,820 + +1.2
4,149,820 + -0.0
4,149,940 + Rru_A3610 0.12 +0.8
4,149,940 + Rru_A3610 0.12 -0.7
4,149,940 + Rru_A3610 0.12 +0.7
4,149,941 - Rru_A3610 0.13 +0.7
4,149,941 - Rru_A3610 0.13 +0.7
4,149,941 - Rru_A3610 0.13 -0.3
4,149,941 - Rru_A3610 0.13 +1.7
4,150,132 + Rru_A3610 0.52 -1.2
4,150,133 - Rru_A3610 0.52 -0.1
4,150,170 + Rru_A3610 0.60 +2.0
4,150,171 - Rru_A3610 0.60 +0.5
4,150,300 + Rru_A3610 0.87 -3.7
4,150,300 + Rru_A3610 0.87 -0.3
4,150,301 - Rru_A3610 0.87 -0.3
4,150,301 - Rru_A3610 0.87 -2.5
4,150,518 + -2.0
4,150,518 + +1.0
4,150,519 - +0.0
4,150,519 - +0.5
4,151,219 - +3.2
4,151,219 - +1.5

Or see this region's nucleotide sequence