Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3608 and Rru_A3609 are separated by 209 nucleotides Rru_A3609 and Rru_A3610 are separated by 115 nucleotides Rru_A3610 and Rru_A3611 are separated by 154 nucleotides Rru_A3611 and Rru_A3612 overlap by 8 nucleotides
Rru_A3608: Rru_A3608 - hypothetical protein (NCBI), at 4,148,332 to 4,148,991
_A3608
Rru_A3609: Rru_A3609 - FxsA cytoplasmic membrane protein (NCBI), at 4,149,201 to 4,149,764
_A3609
Rru_A3610: Rru_A3610 - protein export chaperone SecB (NCBI), at 4,149,880 to 4,150,362
_A3610
Rru_A3611: Rru_A3611 - DNA polymerase III, epsilon subunit (NCBI), at 4,150,517 to 4,151,209
_A3611
Rru_A3612: Rru_A3612 - Dephospho-CoA kinase (NCBI), at 4,151,202 to 4,151,891
_A3612
Position (kb)
4149
4150
4151 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4149.037 kb on - strand at 4149.124 kb on - strand at 4149.155 kb on - strand at 4149.155 kb on - strand at 4149.155 kb on - strand at 4149.155 kb on - strand at 4149.200 kb on + strand at 4149.200 kb on + strand at 4149.200 kb on + strand at 4149.200 kb on + strand at 4149.200 kb on + strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.201 kb on - strand at 4149.722 kb on + strand at 4149.722 kb on + strand at 4149.722 kb on + strand at 4149.722 kb on + strand at 4149.723 kb on - strand at 4149.762 kb on + strand at 4149.763 kb on - strand at 4149.763 kb on - strand at 4149.763 kb on - strand at 4149.820 kb on + strand at 4149.820 kb on + strand at 4149.940 kb on + strand, within Rru_A3610 at 4149.940 kb on + strand, within Rru_A3610 at 4149.940 kb on + strand, within Rru_A3610 at 4149.941 kb on - strand, within Rru_A3610 at 4149.941 kb on - strand, within Rru_A3610 at 4149.941 kb on - strand, within Rru_A3610 at 4149.941 kb on - strand, within Rru_A3610 at 4150.132 kb on + strand, within Rru_A3610 at 4150.133 kb on - strand, within Rru_A3610 at 4150.170 kb on + strand, within Rru_A3610 at 4150.171 kb on - strand, within Rru_A3610 at 4150.300 kb on + strand, within Rru_A3610 at 4150.300 kb on + strand, within Rru_A3610 at 4150.301 kb on - strand, within Rru_A3610 at 4150.301 kb on - strand, within Rru_A3610 at 4150.518 kb on + strand at 4150.518 kb on + strand at 4150.519 kb on - strand at 4150.519 kb on - strand at 4151.219 kb on - strand at 4151.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 4,149,037 - +0.4 4,149,124 - -2.3 4,149,155 - +1.0 4,149,155 - +1.1 4,149,155 - -1.3 4,149,155 - -1.5 4,149,200 + -1.0 4,149,200 + -3.2 4,149,200 + -3.6 4,149,200 + +0.9 4,149,200 + -1.9 4,149,201 - -0.9 4,149,201 - +0.4 4,149,201 - -4.2 4,149,201 - +1.3 4,149,201 - -0.0 4,149,201 - +0.2 4,149,201 - -3.5 4,149,722 + +0.5 4,149,722 + -3.4 4,149,722 + -3.6 4,149,722 + -1.0 4,149,723 - -1.6 4,149,762 + +0.7 4,149,763 - -0.9 4,149,763 - -0.4 4,149,763 - -0.1 4,149,820 + +1.2 4,149,820 + -0.0 4,149,940 + Rru_A3610 0.12 +0.8 4,149,940 + Rru_A3610 0.12 -0.7 4,149,940 + Rru_A3610 0.12 +0.7 4,149,941 - Rru_A3610 0.13 +0.7 4,149,941 - Rru_A3610 0.13 +0.7 4,149,941 - Rru_A3610 0.13 -0.3 4,149,941 - Rru_A3610 0.13 +1.7 4,150,132 + Rru_A3610 0.52 -1.2 4,150,133 - Rru_A3610 0.52 -0.1 4,150,170 + Rru_A3610 0.60 +2.0 4,150,171 - Rru_A3610 0.60 +0.5 4,150,300 + Rru_A3610 0.87 -3.7 4,150,300 + Rru_A3610 0.87 -0.3 4,150,301 - Rru_A3610 0.87 -0.3 4,150,301 - Rru_A3610 0.87 -2.5 4,150,518 + -2.0 4,150,518 + +1.0 4,150,519 - +0.0 4,150,519 - +0.5 4,151,219 - +3.2 4,151,219 - +1.5
Or see this region's nucleotide sequence