Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3367

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3366 and Rru_A3367 are separated by 33 nucleotidesRru_A3367 and Rru_A3368 overlap by 4 nucleotides Rru_A3366: Rru_A3366 - Cobaltochelatase, CobN subunit (NCBI), at 3,880,363 to 3,884,085 _A3366 Rru_A3367: Rru_A3367 - Cob(I)alamin adenosyltransferase (NCBI), at 3,884,119 to 3,884,766 _A3367 Rru_A3368: Rru_A3368 - Transcriptional Regulator, LysR family (NCBI), at 3,884,763 to 3,885,686 _A3368 Position (kb) 3884 3885Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3883.477 kb on + strand, within Rru_A3366at 3883.477 kb on + strand, within Rru_A3366at 3883.477 kb on + strand, within Rru_A3366at 3883.477 kb on + strand, within Rru_A3366at 3883.478 kb on - strand, within Rru_A3366at 3883.478 kb on - strand, within Rru_A3366at 3883.479 kb on + strand, within Rru_A3366at 3883.501 kb on + strand, within Rru_A3366at 3883.501 kb on + strand, within Rru_A3366at 3883.501 kb on + strand, within Rru_A3366at 3883.621 kb on + strand, within Rru_A3366at 3883.621 kb on + strand, within Rru_A3366at 3883.621 kb on + strand, within Rru_A3366at 3883.621 kb on + strand, within Rru_A3366at 3883.622 kb on - strand, within Rru_A3366at 3883.622 kb on - strand, within Rru_A3366at 3883.624 kb on + strand, within Rru_A3366at 3883.625 kb on - strand, within Rru_A3366at 3883.625 kb on - strand, within Rru_A3366at 3883.687 kb on + strand, within Rru_A3366at 3883.688 kb on - strand, within Rru_A3366at 3883.810 kb on + strandat 3883.810 kb on + strandat 3883.811 kb on - strandat 3883.812 kb on + strandat 3883.812 kb on + strandat 3883.813 kb on - strandat 3883.847 kb on - strandat 3883.915 kb on + strandat 3883.916 kb on - strandat 3883.916 kb on - strandat 3883.916 kb on - strandat 3884.083 kb on + strandat 3884.083 kb on + strandat 3884.084 kb on - strandat 3884.084 kb on - strandat 3884.084 kb on - strandat 3884.088 kb on + strandat 3884.089 kb on - strandat 3884.089 kb on - strandat 3884.541 kb on + strand, within Rru_A3367at 3884.541 kb on + strand, within Rru_A3367at 3884.542 kb on - strand, within Rru_A3367at 3884.542 kb on - strand, within Rru_A3367at 3884.542 kb on - strand, within Rru_A3367at 3884.542 kb on - strand, within Rru_A3367at 3884.542 kb on - strand, within Rru_A3367at 3884.578 kb on + strand, within Rru_A3367at 3884.584 kb on + strand, within Rru_A3367at 3884.585 kb on - strand, within Rru_A3367at 3884.585 kb on - strand, within Rru_A3367at 3884.765 kb on - strandat 3884.887 kb on + strand, within Rru_A3368at 3884.887 kb on + strand, within Rru_A3368at 3884.888 kb on - strand, within Rru_A3368at 3884.888 kb on - strand, within Rru_A3368at 3885.481 kb on + strand, within Rru_A3368at 3885.482 kb on - strand, within Rru_A3368at 3885.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,883,477 + Rru_A3366 0.84 -2.8
3,883,477 + Rru_A3366 0.84 -2.1
3,883,477 + Rru_A3366 0.84 -1.1
3,883,477 + Rru_A3366 0.84 -1.4
3,883,478 - Rru_A3366 0.84 -1.6
3,883,478 - Rru_A3366 0.84 +0.2
3,883,479 + Rru_A3366 0.84 -0.7
3,883,501 + Rru_A3366 0.84 -1.1
3,883,501 + Rru_A3366 0.84 -1.5
3,883,501 + Rru_A3366 0.84 +0.6
3,883,621 + Rru_A3366 0.88 +0.1
3,883,621 + Rru_A3366 0.88 -0.7
3,883,621 + Rru_A3366 0.88 +0.8
3,883,621 + Rru_A3366 0.88 -2.3
3,883,622 - Rru_A3366 0.88 -4.3
3,883,622 - Rru_A3366 0.88 -3.7
3,883,624 + Rru_A3366 0.88 -0.7
3,883,625 - Rru_A3366 0.88 +0.3
3,883,625 - Rru_A3366 0.88 +1.3
3,883,687 + Rru_A3366 0.89 -2.3
3,883,688 - Rru_A3366 0.89 -3.1
3,883,810 + -1.8
3,883,810 + +1.5
3,883,811 - -0.8
3,883,812 + -0.1
3,883,812 + -1.8
3,883,813 - -4.6
3,883,847 - -2.9
3,883,915 + +0.1
3,883,916 - -4.2
3,883,916 - -2.2
3,883,916 - -2.1
3,884,083 + +0.1
3,884,083 + -0.7
3,884,084 - +0.2
3,884,084 - +0.9
3,884,084 - +0.5
3,884,088 + -0.7
3,884,089 - -0.4
3,884,089 - +0.3
3,884,541 + Rru_A3367 0.65 +1.4
3,884,541 + Rru_A3367 0.65 -2.0
3,884,542 - Rru_A3367 0.65 -2.5
3,884,542 - Rru_A3367 0.65 -3.2
3,884,542 - Rru_A3367 0.65 -3.4
3,884,542 - Rru_A3367 0.65 +0.1
3,884,542 - Rru_A3367 0.65 -4.8
3,884,578 + Rru_A3367 0.71 -1.6
3,884,584 + Rru_A3367 0.72 -1.9
3,884,585 - Rru_A3367 0.72 -2.7
3,884,585 - Rru_A3367 0.72 +0.5
3,884,765 - +0.6
3,884,887 + Rru_A3368 0.13 +0.8
3,884,887 + Rru_A3368 0.13 -1.7
3,884,888 - Rru_A3368 0.14 -1.6
3,884,888 - Rru_A3368 0.14 +0.5
3,885,481 + Rru_A3368 0.78 -2.3
3,885,482 - Rru_A3368 0.78 -2.6
3,885,734 + -0.1

Or see this region's nucleotide sequence