Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3366 and Rru_A3367 are separated by 33 nucleotides Rru_A3367 and Rru_A3368 overlap by 4 nucleotides
Rru_A3366: Rru_A3366 - Cobaltochelatase, CobN subunit (NCBI), at 3,880,363 to 3,884,085
_A3366
Rru_A3367: Rru_A3367 - Cob(I)alamin adenosyltransferase (NCBI), at 3,884,119 to 3,884,766
_A3367
Rru_A3368: Rru_A3368 - Transcriptional Regulator, LysR family (NCBI), at 3,884,763 to 3,885,686
_A3368
Position (kb)
3884
3885 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3883.477 kb on + strand, within Rru_A3366 at 3883.477 kb on + strand, within Rru_A3366 at 3883.477 kb on + strand, within Rru_A3366 at 3883.477 kb on + strand, within Rru_A3366 at 3883.478 kb on - strand, within Rru_A3366 at 3883.478 kb on - strand, within Rru_A3366 at 3883.479 kb on + strand, within Rru_A3366 at 3883.501 kb on + strand, within Rru_A3366 at 3883.501 kb on + strand, within Rru_A3366 at 3883.501 kb on + strand, within Rru_A3366 at 3883.621 kb on + strand, within Rru_A3366 at 3883.621 kb on + strand, within Rru_A3366 at 3883.621 kb on + strand, within Rru_A3366 at 3883.621 kb on + strand, within Rru_A3366 at 3883.622 kb on - strand, within Rru_A3366 at 3883.622 kb on - strand, within Rru_A3366 at 3883.624 kb on + strand, within Rru_A3366 at 3883.625 kb on - strand, within Rru_A3366 at 3883.625 kb on - strand, within Rru_A3366 at 3883.687 kb on + strand, within Rru_A3366 at 3883.688 kb on - strand, within Rru_A3366 at 3883.810 kb on + strand at 3883.810 kb on + strand at 3883.811 kb on - strand at 3883.812 kb on + strand at 3883.812 kb on + strand at 3883.813 kb on - strand at 3883.847 kb on - strand at 3883.915 kb on + strand at 3883.916 kb on - strand at 3883.916 kb on - strand at 3883.916 kb on - strand at 3884.083 kb on + strand at 3884.083 kb on + strand at 3884.084 kb on - strand at 3884.084 kb on - strand at 3884.084 kb on - strand at 3884.088 kb on + strand at 3884.089 kb on - strand at 3884.089 kb on - strand at 3884.541 kb on + strand, within Rru_A3367 at 3884.541 kb on + strand, within Rru_A3367 at 3884.542 kb on - strand, within Rru_A3367 at 3884.542 kb on - strand, within Rru_A3367 at 3884.542 kb on - strand, within Rru_A3367 at 3884.542 kb on - strand, within Rru_A3367 at 3884.542 kb on - strand, within Rru_A3367 at 3884.578 kb on + strand, within Rru_A3367 at 3884.584 kb on + strand, within Rru_A3367 at 3884.585 kb on - strand, within Rru_A3367 at 3884.585 kb on - strand, within Rru_A3367 at 3884.765 kb on - strand at 3884.887 kb on + strand, within Rru_A3368 at 3884.887 kb on + strand, within Rru_A3368 at 3884.888 kb on - strand, within Rru_A3368 at 3884.888 kb on - strand, within Rru_A3368 at 3885.481 kb on + strand, within Rru_A3368 at 3885.482 kb on - strand, within Rru_A3368 at 3885.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,883,477 + Rru_A3366 0.84 -2.8 3,883,477 + Rru_A3366 0.84 -2.1 3,883,477 + Rru_A3366 0.84 -1.1 3,883,477 + Rru_A3366 0.84 -1.4 3,883,478 - Rru_A3366 0.84 -1.6 3,883,478 - Rru_A3366 0.84 +0.2 3,883,479 + Rru_A3366 0.84 -0.7 3,883,501 + Rru_A3366 0.84 -1.1 3,883,501 + Rru_A3366 0.84 -1.5 3,883,501 + Rru_A3366 0.84 +0.6 3,883,621 + Rru_A3366 0.88 +0.1 3,883,621 + Rru_A3366 0.88 -0.7 3,883,621 + Rru_A3366 0.88 +0.8 3,883,621 + Rru_A3366 0.88 -2.3 3,883,622 - Rru_A3366 0.88 -4.3 3,883,622 - Rru_A3366 0.88 -3.7 3,883,624 + Rru_A3366 0.88 -0.7 3,883,625 - Rru_A3366 0.88 +0.3 3,883,625 - Rru_A3366 0.88 +1.3 3,883,687 + Rru_A3366 0.89 -2.3 3,883,688 - Rru_A3366 0.89 -3.1 3,883,810 + -1.8 3,883,810 + +1.5 3,883,811 - -0.8 3,883,812 + -0.1 3,883,812 + -1.8 3,883,813 - -4.6 3,883,847 - -2.9 3,883,915 + +0.1 3,883,916 - -4.2 3,883,916 - -2.2 3,883,916 - -2.1 3,884,083 + +0.1 3,884,083 + -0.7 3,884,084 - +0.2 3,884,084 - +0.9 3,884,084 - +0.5 3,884,088 + -0.7 3,884,089 - -0.4 3,884,089 - +0.3 3,884,541 + Rru_A3367 0.65 +1.4 3,884,541 + Rru_A3367 0.65 -2.0 3,884,542 - Rru_A3367 0.65 -2.5 3,884,542 - Rru_A3367 0.65 -3.2 3,884,542 - Rru_A3367 0.65 -3.4 3,884,542 - Rru_A3367 0.65 +0.1 3,884,542 - Rru_A3367 0.65 -4.8 3,884,578 + Rru_A3367 0.71 -1.6 3,884,584 + Rru_A3367 0.72 -1.9 3,884,585 - Rru_A3367 0.72 -2.7 3,884,585 - Rru_A3367 0.72 +0.5 3,884,765 - +0.6 3,884,887 + Rru_A3368 0.13 +0.8 3,884,887 + Rru_A3368 0.13 -1.7 3,884,888 - Rru_A3368 0.14 -1.6 3,884,888 - Rru_A3368 0.14 +0.5 3,885,481 + Rru_A3368 0.78 -2.3 3,885,482 - Rru_A3368 0.78 -2.6 3,885,734 + -0.1
Or see this region's nucleotide sequence