Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3307 and Rru_AR0060 are separated by 130 nucleotides Rru_AR0060 and Rru_AR0061 are separated by 116 nucleotides Rru_AR0061 and Rru_AR0062 are separated by 362 nucleotides Rru_AR0062 and Rru_AR0063 are separated by 66 nucleotides Rru_AR0063 and Rru_AR0064 are separated by 184 nucleotides
Rru_A3307: Rru_A3307 - inner-membrane translocator (NCBI), at 3,805,869 to 3,806,813
_A3307
Rru_AR0060: Rru_AR0060 - 5S ribosomal RNA (NCBI), at 3,806,944 to 3,807,058
_AR0060
Rru_AR0061: Rru_AR0061 - 23S ribosomal RNA (NCBI), at 3,807,175 to 3,809,932
_AR0061
Rru_AR0062: Rru_AR0062 - tRNA-Ala (NCBI), at 3,810,295 to 3,810,370
_AR0062
Rru_AR0063: Rru_AR0063 - tRNA-Ile (NCBI), at 3,810,437 to 3,810,513
_AR0063
Rru_AR0064: Rru_AR0064 - 16S ribosomal RNA (NCBI), at 3,810,698 to 3,812,174
_AR0064
Position (kb)
3807
3808
3809
3810 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.187 kb on + strand, within Rru_A3307 at 3806.188 kb on - strand, within Rru_A3307 at 3806.188 kb on - strand, within Rru_A3307 at 3806.226 kb on + strand, within Rru_A3307 at 3806.226 kb on + strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.227 kb on - strand, within Rru_A3307 at 3806.458 kb on - strand, within Rru_A3307 at 3806.458 kb on - strand, within Rru_A3307 at 3806.458 kb on - strand, within Rru_A3307 at 3806.473 kb on - strand, within Rru_A3307 at 3806.473 kb on - strand, within Rru_A3307 at 3806.576 kb on + strand, within Rru_A3307 at 3806.576 kb on + strand, within Rru_A3307 at 3806.576 kb on + strand, within Rru_A3307 at 3806.577 kb on - strand, within Rru_A3307 at 3806.577 kb on - strand, within Rru_A3307 at 3806.621 kb on + strand, within Rru_A3307 at 3806.621 kb on + strand, within Rru_A3307 at 3806.621 kb on + strand, within Rru_A3307 at 3806.622 kb on - strand, within Rru_A3307 at 3806.959 kb on - strand, within Rru_AR0060
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,806,187 + Rru_A3307 0.34 +0.5 3,806,187 + Rru_A3307 0.34 -1.1 3,806,187 + Rru_A3307 0.34 -2.7 3,806,187 + Rru_A3307 0.34 -1.4 3,806,187 + Rru_A3307 0.34 -0.0 3,806,187 + Rru_A3307 0.34 -1.4 3,806,187 + Rru_A3307 0.34 -0.9 3,806,188 - Rru_A3307 0.34 -3.9 3,806,188 - Rru_A3307 0.34 -2.5 3,806,226 + Rru_A3307 0.38 -0.4 3,806,226 + Rru_A3307 0.38 -1.1 3,806,227 - Rru_A3307 0.38 +1.3 3,806,227 - Rru_A3307 0.38 -3.0 3,806,227 - Rru_A3307 0.38 -0.1 3,806,227 - Rru_A3307 0.38 +1.0 3,806,227 - Rru_A3307 0.38 +0.9 3,806,227 - Rru_A3307 0.38 -0.4 3,806,227 - Rru_A3307 0.38 -1.2 3,806,458 - Rru_A3307 0.62 +0.2 3,806,458 - Rru_A3307 0.62 -0.5 3,806,458 - Rru_A3307 0.62 -0.5 3,806,473 - Rru_A3307 0.64 -0.2 3,806,473 - Rru_A3307 0.64 +0.2 3,806,576 + Rru_A3307 0.75 +0.7 3,806,576 + Rru_A3307 0.75 -0.4 3,806,576 + Rru_A3307 0.75 +1.0 3,806,577 - Rru_A3307 0.75 -1.1 3,806,577 - Rru_A3307 0.75 +1.6 3,806,621 + Rru_A3307 0.80 -0.8 3,806,621 + Rru_A3307 0.80 +0.1 3,806,621 + Rru_A3307 0.80 -3.4 3,806,622 - Rru_A3307 0.80 +0.6 3,806,959 - Rru_AR0060 0.13 -1.9
Or see this region's nucleotide sequence