Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3150

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3149 and Rru_A3150 overlap by 4 nucleotidesRru_A3150 and Rru_A3151 are separated by 3 nucleotides Rru_A3149: Rru_A3149 - Protein of unknown function DUF214 (NCBI), at 3,633,942 to 3,635,174 _A3149 Rru_A3150: Rru_A3150 - ABC transporter component (NCBI), at 3,635,171 to 3,635,893 _A3150 Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894 _A3151 Position (kb) 3635 3636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3634.305 kb on + strand, within Rru_A3149at 3635.610 kb on + strand, within Rru_A3150at 3635.610 kb on + strand, within Rru_A3150at 3635.611 kb on - strand, within Rru_A3150at 3635.611 kb on - strand, within Rru_A3150at 3635.677 kb on + strand, within Rru_A3150at 3635.678 kb on - strand, within Rru_A3150at 3635.762 kb on - strand, within Rru_A3150at 3635.899 kb on - strandat 3635.899 kb on - strandat 3635.978 kb on - strandat 3635.988 kb on + strandat 3635.989 kb on - strandat 3635.997 kb on + strandat 3635.998 kb on - strandat 3636.015 kb on + strandat 3636.016 kb on - strandat 3636.100 kb on - strand, within Rru_A3151at 3636.518 kb on + strand, within Rru_A3151at 3636.519 kb on - strand, within Rru_A3151at 3636.616 kb on - strand, within Rru_A3151at 3636.616 kb on - strand, within Rru_A3151at 3636.618 kb on + strand, within Rru_A3151at 3636.619 kb on - strand, within Rru_A3151at 3636.619 kb on - strand, within Rru_A3151at 3636.619 kb on - strand, within Rru_A3151at 3636.619 kb on - strand, within Rru_A3151at 3636.657 kb on + strand, within Rru_A3151at 3636.718 kb on - strand, within Rru_A3151at 3636.856 kb on - strand, within Rru_A3151

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
3,634,305 + Rru_A3149 0.29 -4.2
3,635,610 + Rru_A3150 0.61 -2.8
3,635,610 + Rru_A3150 0.61 -0.8
3,635,611 - Rru_A3150 0.61 -1.8
3,635,611 - Rru_A3150 0.61 -0.8
3,635,677 + Rru_A3150 0.70 +0.1
3,635,678 - Rru_A3150 0.70 -2.9
3,635,762 - Rru_A3150 0.82 -0.1
3,635,899 - -0.6
3,635,899 - -2.7
3,635,978 - +0.2
3,635,988 + -0.7
3,635,989 - -3.2
3,635,997 + +2.5
3,635,998 - +0.5
3,636,015 + +0.5
3,636,016 - -2.0
3,636,100 - Rru_A3151 0.10 +0.2
3,636,518 + Rru_A3151 0.31 -2.7
3,636,519 - Rru_A3151 0.31 +0.3
3,636,616 - Rru_A3151 0.36 +0.3
3,636,616 - Rru_A3151 0.36 -3.0
3,636,618 + Rru_A3151 0.36 +0.4
3,636,619 - Rru_A3151 0.36 +0.7
3,636,619 - Rru_A3151 0.36 -2.4
3,636,619 - Rru_A3151 0.36 +1.9
3,636,619 - Rru_A3151 0.36 +0.5
3,636,657 + Rru_A3151 0.38 -2.3
3,636,718 - Rru_A3151 0.41 -1.2
3,636,856 - Rru_A3151 0.48 +1.2

Or see this region's nucleotide sequence