Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3148 and Rru_A3149 overlap by 11 nucleotides Rru_A3149 and Rru_A3150 overlap by 4 nucleotides Rru_A3150 and Rru_A3151 are separated by 3 nucleotides
Rru_A3148: Rru_A3148 - Protein of unknown function DUF323 (NCBI), at 3,632,405 to 3,633,952
_A3148
Rru_A3149: Rru_A3149 - Protein of unknown function DUF214 (NCBI), at 3,633,942 to 3,635,174
_A3149
Rru_A3150: Rru_A3150 - ABC transporter component (NCBI), at 3,635,171 to 3,635,893
_A3150
Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894
_A3151
Position (kb)
3633
3634
3635
3636 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3633.229 kb on + strand, within Rru_A3148 at 3633.229 kb on + strand, within Rru_A3148 at 3633.230 kb on - strand, within Rru_A3148 at 3633.230 kb on - strand, within Rru_A3148 at 3633.306 kb on + strand, within Rru_A3148 at 3633.306 kb on + strand, within Rru_A3148 at 3633.306 kb on + strand, within Rru_A3148 at 3633.306 kb on + strand, within Rru_A3148 at 3633.396 kb on + strand, within Rru_A3148 at 3633.397 kb on - strand, within Rru_A3148 at 3633.492 kb on + strand, within Rru_A3148 at 3633.492 kb on + strand, within Rru_A3148 at 3633.595 kb on - strand, within Rru_A3148 at 3633.616 kb on - strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.627 kb on + strand, within Rru_A3148 at 3633.628 kb on - strand, within Rru_A3148 at 3633.628 kb on - strand, within Rru_A3148 at 3633.982 kb on + strand at 3633.982 kb on + strand at 3633.983 kb on - strand at 3634.062 kb on + strand at 3634.063 kb on - strand at 3634.305 kb on + strand, within Rru_A3149 at 3635.610 kb on + strand, within Rru_A3150 at 3635.610 kb on + strand, within Rru_A3150 at 3635.611 kb on - strand, within Rru_A3150 at 3635.611 kb on - strand, within Rru_A3150 at 3635.677 kb on + strand, within Rru_A3150 at 3635.678 kb on - strand, within Rru_A3150 at 3635.762 kb on - strand, within Rru_A3150 at 3635.899 kb on - strand at 3635.899 kb on - strand at 3635.978 kb on - strand at 3635.988 kb on + strand at 3635.989 kb on - strand at 3635.997 kb on + strand at 3635.998 kb on - strand at 3636.015 kb on + strand at 3636.016 kb on - strand at 3636.100 kb on - strand, within Rru_A3151
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,633,229 + Rru_A3148 0.53 +0.2 3,633,229 + Rru_A3148 0.53 +0.1 3,633,230 - Rru_A3148 0.53 +0.2 3,633,230 - Rru_A3148 0.53 -1.6 3,633,306 + Rru_A3148 0.58 +0.3 3,633,306 + Rru_A3148 0.58 -0.4 3,633,306 + Rru_A3148 0.58 +0.9 3,633,306 + Rru_A3148 0.58 -1.6 3,633,396 + Rru_A3148 0.64 +0.2 3,633,397 - Rru_A3148 0.64 -2.6 3,633,492 + Rru_A3148 0.70 +1.4 3,633,492 + Rru_A3148 0.70 -1.4 3,633,595 - Rru_A3148 0.77 -0.6 3,633,616 - Rru_A3148 0.78 -0.6 3,633,627 + Rru_A3148 0.79 -3.4 3,633,627 + Rru_A3148 0.79 +1.2 3,633,627 + Rru_A3148 0.79 -0.9 3,633,627 + Rru_A3148 0.79 +0.4 3,633,627 + Rru_A3148 0.79 +0.8 3,633,627 + Rru_A3148 0.79 -2.2 3,633,627 + Rru_A3148 0.79 -1.8 3,633,628 - Rru_A3148 0.79 -2.8 3,633,628 - Rru_A3148 0.79 +0.6 3,633,982 + +0.6 3,633,982 + +0.3 3,633,983 - -1.3 3,634,062 + -0.7 3,634,063 - +0.1 3,634,305 + Rru_A3149 0.29 -4.2 3,635,610 + Rru_A3150 0.61 -2.8 3,635,610 + Rru_A3150 0.61 -0.8 3,635,611 - Rru_A3150 0.61 -1.8 3,635,611 - Rru_A3150 0.61 -0.8 3,635,677 + Rru_A3150 0.70 +0.1 3,635,678 - Rru_A3150 0.70 -2.9 3,635,762 - Rru_A3150 0.82 -0.1 3,635,899 - -0.6 3,635,899 - -2.7 3,635,978 - +0.2 3,635,988 + -0.7 3,635,989 - -3.2 3,635,997 + +2.5 3,635,998 - +0.5 3,636,015 + +0.5 3,636,016 - -2.0 3,636,100 - Rru_A3151 0.10 +0.2
Or see this region's nucleotide sequence