Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3149

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3148 and Rru_A3149 overlap by 11 nucleotidesRru_A3149 and Rru_A3150 overlap by 4 nucleotidesRru_A3150 and Rru_A3151 are separated by 3 nucleotides Rru_A3148: Rru_A3148 - Protein of unknown function DUF323 (NCBI), at 3,632,405 to 3,633,952 _A3148 Rru_A3149: Rru_A3149 - Protein of unknown function DUF214 (NCBI), at 3,633,942 to 3,635,174 _A3149 Rru_A3150: Rru_A3150 - ABC transporter component (NCBI), at 3,635,171 to 3,635,893 _A3150 Rru_A3151: Rru_A3151 - serine/threonine protein kinase (NCBI), at 3,635,897 to 3,637,894 _A3151 Position (kb) 3633 3634 3635 3636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3633.229 kb on + strand, within Rru_A3148at 3633.229 kb on + strand, within Rru_A3148at 3633.230 kb on - strand, within Rru_A3148at 3633.230 kb on - strand, within Rru_A3148at 3633.306 kb on + strand, within Rru_A3148at 3633.306 kb on + strand, within Rru_A3148at 3633.306 kb on + strand, within Rru_A3148at 3633.306 kb on + strand, within Rru_A3148at 3633.396 kb on + strand, within Rru_A3148at 3633.397 kb on - strand, within Rru_A3148at 3633.492 kb on + strand, within Rru_A3148at 3633.492 kb on + strand, within Rru_A3148at 3633.595 kb on - strand, within Rru_A3148at 3633.616 kb on - strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.627 kb on + strand, within Rru_A3148at 3633.628 kb on - strand, within Rru_A3148at 3633.628 kb on - strand, within Rru_A3148at 3633.982 kb on + strandat 3633.982 kb on + strandat 3633.983 kb on - strandat 3634.062 kb on + strandat 3634.063 kb on - strandat 3634.305 kb on + strand, within Rru_A3149at 3635.610 kb on + strand, within Rru_A3150at 3635.610 kb on + strand, within Rru_A3150at 3635.611 kb on - strand, within Rru_A3150at 3635.611 kb on - strand, within Rru_A3150at 3635.677 kb on + strand, within Rru_A3150at 3635.678 kb on - strand, within Rru_A3150at 3635.762 kb on - strand, within Rru_A3150at 3635.899 kb on - strandat 3635.899 kb on - strandat 3635.978 kb on - strandat 3635.988 kb on + strandat 3635.989 kb on - strandat 3635.997 kb on + strandat 3635.998 kb on - strandat 3636.015 kb on + strandat 3636.016 kb on - strandat 3636.100 kb on - strand, within Rru_A3151

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,633,229 + Rru_A3148 0.53 +0.2
3,633,229 + Rru_A3148 0.53 +0.1
3,633,230 - Rru_A3148 0.53 +0.2
3,633,230 - Rru_A3148 0.53 -1.6
3,633,306 + Rru_A3148 0.58 +0.3
3,633,306 + Rru_A3148 0.58 -0.4
3,633,306 + Rru_A3148 0.58 +0.9
3,633,306 + Rru_A3148 0.58 -1.6
3,633,396 + Rru_A3148 0.64 +0.2
3,633,397 - Rru_A3148 0.64 -2.6
3,633,492 + Rru_A3148 0.70 +1.4
3,633,492 + Rru_A3148 0.70 -1.4
3,633,595 - Rru_A3148 0.77 -0.6
3,633,616 - Rru_A3148 0.78 -0.6
3,633,627 + Rru_A3148 0.79 -3.4
3,633,627 + Rru_A3148 0.79 +1.2
3,633,627 + Rru_A3148 0.79 -0.9
3,633,627 + Rru_A3148 0.79 +0.4
3,633,627 + Rru_A3148 0.79 +0.8
3,633,627 + Rru_A3148 0.79 -2.2
3,633,627 + Rru_A3148 0.79 -1.8
3,633,628 - Rru_A3148 0.79 -2.8
3,633,628 - Rru_A3148 0.79 +0.6
3,633,982 + +0.6
3,633,982 + +0.3
3,633,983 - -1.3
3,634,062 + -0.7
3,634,063 - +0.1
3,634,305 + Rru_A3149 0.29 -4.2
3,635,610 + Rru_A3150 0.61 -2.8
3,635,610 + Rru_A3150 0.61 -0.8
3,635,611 - Rru_A3150 0.61 -1.8
3,635,611 - Rru_A3150 0.61 -0.8
3,635,677 + Rru_A3150 0.70 +0.1
3,635,678 - Rru_A3150 0.70 -2.9
3,635,762 - Rru_A3150 0.82 -0.1
3,635,899 - -0.6
3,635,899 - -2.7
3,635,978 - +0.2
3,635,988 + -0.7
3,635,989 - -3.2
3,635,997 + +2.5
3,635,998 - +0.5
3,636,015 + +0.5
3,636,016 - -2.0
3,636,100 - Rru_A3151 0.10 +0.2

Or see this region's nucleotide sequence