Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2581

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2580 and Rru_A2581 overlap by 8 nucleotidesRru_A2581 and Rru_A2582 are separated by 3 nucleotidesRru_A2582 and Rru_A2583 are separated by 193 nucleotides Rru_A2580: Rru_A2580 - hypothetical protein (NCBI), at 3,001,264 to 3,002,517 _A2580 Rru_A2581: Rru_A2581 - hypothetical protein (NCBI), at 3,002,510 to 3,004,486 _A2581 Rru_A2582: Rru_A2582 - hypothetical protein (NCBI), at 3,004,490 to 3,005,017 _A2582 Rru_A2583: Rru_A2583 - hypothetical protein (NCBI), at 3,005,211 to 3,005,594 _A2583 Position (kb) 3002 3003 3004 3005Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.132 kb on + strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580at 3002.133 kb on - strand, within Rru_A2580at 3002.511 kb on + strandat 3002.512 kb on - strandat 3002.697 kb on + strandat 3002.698 kb on - strandat 3002.698 kb on - strandat 3002.698 kb on - strandat 3002.805 kb on + strand, within Rru_A2581at 3002.886 kb on + strand, within Rru_A2581at 3002.886 kb on + strand, within Rru_A2581at 3002.887 kb on - strand, within Rru_A2581at 3002.898 kb on + strand, within Rru_A2581at 3002.899 kb on - strand, within Rru_A2581at 3002.899 kb on - strand, within Rru_A2581at 3002.899 kb on - strand, within Rru_A2581at 3002.899 kb on - strand, within Rru_A2581at 3003.172 kb on + strand, within Rru_A2581at 3003.173 kb on - strand, within Rru_A2581at 3003.742 kb on + strand, within Rru_A2581at 3003.742 kb on + strand, within Rru_A2581at 3003.743 kb on - strand, within Rru_A2581at 3003.743 kb on - strand, within Rru_A2581at 3003.743 kb on - strand, within Rru_A2581at 3003.744 kb on + strand, within Rru_A2581at 3003.745 kb on - strand, within Rru_A2581at 3003.745 kb on - strand, within Rru_A2581at 3004.004 kb on + strand, within Rru_A2581at 3004.004 kb on + strand, within Rru_A2581at 3004.004 kb on + strand, within Rru_A2581at 3004.122 kb on + strand, within Rru_A2581at 3004.140 kb on + strand, within Rru_A2581at 3004.140 kb on + strand, within Rru_A2581at 3004.140 kb on + strand, within Rru_A2581at 3004.470 kb on + strandat 3004.470 kb on + strandat 3004.471 kb on - strandat 3004.846 kb on - strand, within Rru_A2582at 3005.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,002,132 + Rru_A2580 0.69 +1.0
3,002,132 + Rru_A2580 0.69 -0.0
3,002,132 + Rru_A2580 0.69 +0.4
3,002,132 + Rru_A2580 0.69 +0.5
3,002,132 + Rru_A2580 0.69 +2.4
3,002,132 + Rru_A2580 0.69 +1.1
3,002,133 - Rru_A2580 0.69 -1.3
3,002,133 - Rru_A2580 0.69 +1.0
3,002,133 - Rru_A2580 0.69 -3.1
3,002,511 + -3.9
3,002,512 - -4.5
3,002,697 + -2.8
3,002,698 - -2.9
3,002,698 - +1.4
3,002,698 - +0.1
3,002,805 + Rru_A2581 0.15 +1.6
3,002,886 + Rru_A2581 0.19 -2.2
3,002,886 + Rru_A2581 0.19 -1.8
3,002,887 - Rru_A2581 0.19 -0.1
3,002,898 + Rru_A2581 0.20 -1.7
3,002,899 - Rru_A2581 0.20 -0.4
3,002,899 - Rru_A2581 0.20 +0.4
3,002,899 - Rru_A2581 0.20 -2.7
3,002,899 - Rru_A2581 0.20 -1.5
3,003,172 + Rru_A2581 0.33 +0.4
3,003,173 - Rru_A2581 0.34 -0.8
3,003,742 + Rru_A2581 0.62 +0.0
3,003,742 + Rru_A2581 0.62 +0.2
3,003,743 - Rru_A2581 0.62 -5.2
3,003,743 - Rru_A2581 0.62 -0.6
3,003,743 - Rru_A2581 0.62 +0.2
3,003,744 + Rru_A2581 0.62 -4.1
3,003,745 - Rru_A2581 0.62 +1.0
3,003,745 - Rru_A2581 0.62 -2.8
3,004,004 + Rru_A2581 0.76 -5.4
3,004,004 + Rru_A2581 0.76 +0.5
3,004,004 + Rru_A2581 0.76 -0.0
3,004,122 + Rru_A2581 0.82 +1.4
3,004,140 + Rru_A2581 0.82 -2.2
3,004,140 + Rru_A2581 0.82 -2.9
3,004,140 + Rru_A2581 0.82 +1.5
3,004,470 + -0.3
3,004,470 + +0.9
3,004,471 - +0.4
3,004,846 - Rru_A2582 0.67 -2.1
3,005,234 - -3.3

Or see this region's nucleotide sequence