Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2580 and Rru_A2581 overlap by 8 nucleotides Rru_A2581 and Rru_A2582 are separated by 3 nucleotides Rru_A2582 and Rru_A2583 are separated by 193 nucleotides
Rru_A2580: Rru_A2580 - hypothetical protein (NCBI), at 3,001,264 to 3,002,517
_A2580
Rru_A2581: Rru_A2581 - hypothetical protein (NCBI), at 3,002,510 to 3,004,486
_A2581
Rru_A2582: Rru_A2582 - hypothetical protein (NCBI), at 3,004,490 to 3,005,017
_A2582
Rru_A2583: Rru_A2583 - hypothetical protein (NCBI), at 3,005,211 to 3,005,594
_A2583
Position (kb)
3002
3003
3004
3005 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.132 kb on + strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580 at 3002.133 kb on - strand, within Rru_A2580 at 3002.511 kb on + strand at 3002.512 kb on - strand at 3002.697 kb on + strand at 3002.698 kb on - strand at 3002.698 kb on - strand at 3002.698 kb on - strand at 3002.805 kb on + strand, within Rru_A2581 at 3002.886 kb on + strand, within Rru_A2581 at 3002.886 kb on + strand, within Rru_A2581 at 3002.887 kb on - strand, within Rru_A2581 at 3002.898 kb on + strand, within Rru_A2581 at 3002.899 kb on - strand, within Rru_A2581 at 3002.899 kb on - strand, within Rru_A2581 at 3002.899 kb on - strand, within Rru_A2581 at 3002.899 kb on - strand, within Rru_A2581 at 3003.172 kb on + strand, within Rru_A2581 at 3003.173 kb on - strand, within Rru_A2581 at 3003.742 kb on + strand, within Rru_A2581 at 3003.742 kb on + strand, within Rru_A2581 at 3003.743 kb on - strand, within Rru_A2581 at 3003.743 kb on - strand, within Rru_A2581 at 3003.743 kb on - strand, within Rru_A2581 at 3003.744 kb on + strand, within Rru_A2581 at 3003.745 kb on - strand, within Rru_A2581 at 3003.745 kb on - strand, within Rru_A2581 at 3004.004 kb on + strand, within Rru_A2581 at 3004.004 kb on + strand, within Rru_A2581 at 3004.004 kb on + strand, within Rru_A2581 at 3004.122 kb on + strand, within Rru_A2581 at 3004.140 kb on + strand, within Rru_A2581 at 3004.140 kb on + strand, within Rru_A2581 at 3004.140 kb on + strand, within Rru_A2581 at 3004.470 kb on + strand at 3004.470 kb on + strand at 3004.471 kb on - strand at 3004.846 kb on - strand, within Rru_A2582 at 3005.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,002,132 + Rru_A2580 0.69 +1.0 3,002,132 + Rru_A2580 0.69 -0.0 3,002,132 + Rru_A2580 0.69 +0.4 3,002,132 + Rru_A2580 0.69 +0.5 3,002,132 + Rru_A2580 0.69 +2.4 3,002,132 + Rru_A2580 0.69 +1.1 3,002,133 - Rru_A2580 0.69 -1.3 3,002,133 - Rru_A2580 0.69 +1.0 3,002,133 - Rru_A2580 0.69 -3.1 3,002,511 + -3.9 3,002,512 - -4.5 3,002,697 + -2.8 3,002,698 - -2.9 3,002,698 - +1.4 3,002,698 - +0.1 3,002,805 + Rru_A2581 0.15 +1.6 3,002,886 + Rru_A2581 0.19 -2.2 3,002,886 + Rru_A2581 0.19 -1.8 3,002,887 - Rru_A2581 0.19 -0.1 3,002,898 + Rru_A2581 0.20 -1.7 3,002,899 - Rru_A2581 0.20 -0.4 3,002,899 - Rru_A2581 0.20 +0.4 3,002,899 - Rru_A2581 0.20 -2.7 3,002,899 - Rru_A2581 0.20 -1.5 3,003,172 + Rru_A2581 0.33 +0.4 3,003,173 - Rru_A2581 0.34 -0.8 3,003,742 + Rru_A2581 0.62 +0.0 3,003,742 + Rru_A2581 0.62 +0.2 3,003,743 - Rru_A2581 0.62 -5.2 3,003,743 - Rru_A2581 0.62 -0.6 3,003,743 - Rru_A2581 0.62 +0.2 3,003,744 + Rru_A2581 0.62 -4.1 3,003,745 - Rru_A2581 0.62 +1.0 3,003,745 - Rru_A2581 0.62 -2.8 3,004,004 + Rru_A2581 0.76 -5.4 3,004,004 + Rru_A2581 0.76 +0.5 3,004,004 + Rru_A2581 0.76 -0.0 3,004,122 + Rru_A2581 0.82 +1.4 3,004,140 + Rru_A2581 0.82 -2.2 3,004,140 + Rru_A2581 0.82 -2.9 3,004,140 + Rru_A2581 0.82 +1.5 3,004,470 + -0.3 3,004,470 + +0.9 3,004,471 - +0.4 3,004,846 - Rru_A2582 0.67 -2.1 3,005,234 - -3.3
Or see this region's nucleotide sequence