Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2332

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2330 and Rru_A2331 are separated by 11 nucleotidesRru_A2331 and Rru_A2332 overlap by 4 nucleotidesRru_A2332 and Rru_A2333 are separated by 95 nucleotides Rru_A2330: Rru_A2330 - Response regulator receiver domain protein (CheY) (NCBI), at 2,700,242 to 2,700,616 _A2330 Rru_A2331: Rru_A2331 - hypothetical protein (NCBI), at 2,700,628 to 2,701,341 _A2331 Rru_A2332: Rru_A2332 - Response regulator receiver domain protein (CheY) (NCBI), at 2,701,338 to 2,701,718 _A2332 Rru_A2333: Rru_A2333 - chemotaxis sensory transducer (NCBI), at 2,701,814 to 2,703,199 _A2333 Position (kb) 2701 2702Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2700.409 kb on + strand, within Rru_A2330at 2700.409 kb on + strand, within Rru_A2330at 2700.409 kb on + strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.410 kb on - strand, within Rru_A2330at 2700.781 kb on + strand, within Rru_A2331at 2700.781 kb on + strand, within Rru_A2331at 2700.882 kb on - strand, within Rru_A2331at 2700.882 kb on - strand, within Rru_A2331at 2700.882 kb on - strand, within Rru_A2331at 2700.882 kb on - strand, within Rru_A2331at 2700.882 kb on - strand, within Rru_A2331at 2701.103 kb on + strand, within Rru_A2331at 2701.104 kb on - strand, within Rru_A2331at 2701.104 kb on - strand, within Rru_A2331at 2701.104 kb on - strand, within Rru_A2331at 2701.104 kb on - strand, within Rru_A2331at 2701.104 kb on - strand, within Rru_A2331at 2701.415 kb on + strand, within Rru_A2332at 2701.416 kb on - strand, within Rru_A2332at 2701.422 kb on + strand, within Rru_A2332at 2701.423 kb on - strand, within Rru_A2332at 2701.423 kb on - strand, within Rru_A2332at 2701.423 kb on - strand, within Rru_A2332at 2701.423 kb on - strand, within Rru_A2332at 2701.801 kb on + strandat 2702.225 kb on + strand, within Rru_A2333at 2702.225 kb on + strand, within Rru_A2333at 2702.346 kb on + strand, within Rru_A2333at 2702.346 kb on + strand, within Rru_A2333at 2702.346 kb on + strand, within Rru_A2333

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,700,409 + Rru_A2330 0.45 -1.2
2,700,409 + Rru_A2330 0.45 +0.2
2,700,409 + Rru_A2330 0.45 -2.0
2,700,410 - Rru_A2330 0.45 -3.5
2,700,410 - Rru_A2330 0.45 +0.9
2,700,410 - Rru_A2330 0.45 -0.6
2,700,410 - Rru_A2330 0.45 -0.3
2,700,781 + Rru_A2331 0.21 +0.5
2,700,781 + Rru_A2331 0.21 -2.1
2,700,882 - Rru_A2331 0.36 -1.5
2,700,882 - Rru_A2331 0.36 +0.5
2,700,882 - Rru_A2331 0.36 +0.5
2,700,882 - Rru_A2331 0.36 +0.5
2,700,882 - Rru_A2331 0.36 +0.4
2,701,103 + Rru_A2331 0.67 +0.3
2,701,104 - Rru_A2331 0.67 -1.1
2,701,104 - Rru_A2331 0.67 +0.8
2,701,104 - Rru_A2331 0.67 -3.8
2,701,104 - Rru_A2331 0.67 +0.3
2,701,104 - Rru_A2331 0.67 +1.8
2,701,415 + Rru_A2332 0.20 +1.4
2,701,416 - Rru_A2332 0.20 -2.0
2,701,422 + Rru_A2332 0.22 -0.1
2,701,423 - Rru_A2332 0.22 +0.8
2,701,423 - Rru_A2332 0.22 -1.7
2,701,423 - Rru_A2332 0.22 -1.6
2,701,423 - Rru_A2332 0.22 -4.1
2,701,801 + +1.4
2,702,225 + Rru_A2333 0.30 +1.0
2,702,225 + Rru_A2333 0.30 -0.5
2,702,346 + Rru_A2333 0.38 -1.7
2,702,346 + Rru_A2333 0.38 -0.3
2,702,346 + Rru_A2333 0.38 -0.1

Or see this region's nucleotide sequence