Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2129

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2128 and Rru_A2129 are separated by 69 nucleotidesRru_A2129 and Rru_A2130 are separated by 101 nucleotides Rru_A2128: Rru_A2128 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 2,470,645 to 2,471,568 _A2128 Rru_A2129: Rru_A2129 - Fumarate hydratase, class II (NCBI), at 2,471,638 to 2,473,101 _A2129 Rru_A2130: Rru_A2130 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 2,473,203 to 2,473,811 _A2130 Position (kb) 2471 2472 2473 2474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2470.781 kb on + strand, within Rru_A2128at 2470.781 kb on + strand, within Rru_A2128at 2470.781 kb on + strand, within Rru_A2128at 2470.782 kb on - strand, within Rru_A2128at 2470.806 kb on - strand, within Rru_A2128at 2470.806 kb on - strand, within Rru_A2128at 2470.993 kb on + strand, within Rru_A2128at 2470.993 kb on + strand, within Rru_A2128at 2470.993 kb on + strand, within Rru_A2128at 2470.993 kb on + strand, within Rru_A2128at 2470.994 kb on - strand, within Rru_A2128at 2471.070 kb on + strand, within Rru_A2128at 2471.070 kb on + strand, within Rru_A2128at 2471.071 kb on - strand, within Rru_A2128at 2471.071 kb on - strand, within Rru_A2128at 2471.071 kb on - strand, within Rru_A2128at 2471.071 kb on - strand, within Rru_A2128at 2471.173 kb on + strand, within Rru_A2128at 2471.174 kb on - strand, within Rru_A2128at 2471.176 kb on - strand, within Rru_A2128at 2471.596 kb on + strandat 2471.597 kb on - strandat 2471.723 kb on - strandat 2472.011 kb on + strand, within Rru_A2129at 2472.012 kb on - strand, within Rru_A2129at 2472.012 kb on - strand, within Rru_A2129at 2472.012 kb on - strand, within Rru_A2129at 2472.066 kb on + strand, within Rru_A2129at 2472.067 kb on - strand, within Rru_A2129at 2472.108 kb on + strand, within Rru_A2129at 2472.108 kb on + strand, within Rru_A2129at 2472.109 kb on - strand, within Rru_A2129at 2472.271 kb on + strand, within Rru_A2129at 2472.272 kb on - strand, within Rru_A2129at 2472.543 kb on + strand, within Rru_A2129at 2472.760 kb on + strand, within Rru_A2129at 2472.761 kb on - strand, within Rru_A2129at 2472.761 kb on - strand, within Rru_A2129at 2472.761 kb on - strand, within Rru_A2129at 2472.762 kb on + strand, within Rru_A2129at 2473.168 kb on + strandat 2473.168 kb on + strandat 2473.169 kb on - strandat 2473.173 kb on + strandat 2473.327 kb on - strand, within Rru_A2130at 2473.359 kb on + strand, within Rru_A2130at 2473.360 kb on - strand, within Rru_A2130at 2473.446 kb on + strand, within Rru_A2130at 2473.467 kb on - strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.584 kb on + strand, within Rru_A2130at 2473.585 kb on - strand, within Rru_A2130at 2473.585 kb on - strand, within Rru_A2130at 2473.585 kb on - strand, within Rru_A2130at 2473.585 kb on - strand, within Rru_A2130at 2473.613 kb on + strand, within Rru_A2130at 2473.613 kb on + strand, within Rru_A2130at 2473.613 kb on + strand, within Rru_A2130at 2473.614 kb on - strand, within Rru_A2130at 2473.692 kb on + strand, within Rru_A2130at 2473.693 kb on - strand, within Rru_A2130at 2473.859 kb on + strandat 2473.860 kb on - strandat 2473.864 kb on + strandat 2473.865 kb on - strandat 2473.872 kb on + strandat 2473.872 kb on + strandat 2473.872 kb on + strandat 2473.872 kb on + strandat 2473.974 kb on - strandat 2473.974 kb on - strandat 2473.987 kb on + strandat 2473.987 kb on + strandat 2473.988 kb on - strandat 2473.988 kb on - strandat 2473.988 kb on - strandat 2473.988 kb on - strandat 2473.988 kb on - strandat 2473.996 kb on + strandat 2474.012 kb on - strandat 2474.027 kb on + strandat 2474.028 kb on - strandat 2474.053 kb on - strandat 2474.053 kb on - strandat 2474.053 kb on - strandat 2474.055 kb on + strandat 2474.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,470,781 + Rru_A2128 0.15 -0.0
2,470,781 + Rru_A2128 0.15 +0.1
2,470,781 + Rru_A2128 0.15 -1.3
2,470,782 - Rru_A2128 0.15 -1.5
2,470,806 - Rru_A2128 0.17 -3.4
2,470,806 - Rru_A2128 0.17 -2.3
2,470,993 + Rru_A2128 0.38 -3.2
2,470,993 + Rru_A2128 0.38 -2.0
2,470,993 + Rru_A2128 0.38 +1.8
2,470,993 + Rru_A2128 0.38 +1.7
2,470,994 - Rru_A2128 0.38 -2.6
2,471,070 + Rru_A2128 0.46 -1.1
2,471,070 + Rru_A2128 0.46 -2.5
2,471,071 - Rru_A2128 0.46 +1.1
2,471,071 - Rru_A2128 0.46 +1.2
2,471,071 - Rru_A2128 0.46 -0.5
2,471,071 - Rru_A2128 0.46 -0.4
2,471,173 + Rru_A2128 0.57 -2.2
2,471,174 - Rru_A2128 0.57 +0.1
2,471,176 - Rru_A2128 0.57 -0.5
2,471,596 + +0.7
2,471,597 - -0.3
2,471,723 - +0.4
2,472,011 + Rru_A2129 0.25 +1.2
2,472,012 - Rru_A2129 0.26 -0.9
2,472,012 - Rru_A2129 0.26 -1.3
2,472,012 - Rru_A2129 0.26 -0.4
2,472,066 + Rru_A2129 0.29 -1.6
2,472,067 - Rru_A2129 0.29 -0.1
2,472,108 + Rru_A2129 0.32 +0.3
2,472,108 + Rru_A2129 0.32 -3.0
2,472,109 - Rru_A2129 0.32 -0.3
2,472,271 + Rru_A2129 0.43 +0.8
2,472,272 - Rru_A2129 0.43 -4.1
2,472,543 + Rru_A2129 0.62 +1.7
2,472,760 + Rru_A2129 0.77 -0.1
2,472,761 - Rru_A2129 0.77 -1.2
2,472,761 - Rru_A2129 0.77 +0.5
2,472,761 - Rru_A2129 0.77 -0.7
2,472,762 + Rru_A2129 0.77 +0.3
2,473,168 + -2.9
2,473,168 + -3.2
2,473,169 - -0.0
2,473,173 + +0.6
2,473,327 - Rru_A2130 0.20 +0.5
2,473,359 + Rru_A2130 0.26 +0.5
2,473,360 - Rru_A2130 0.26 +1.4
2,473,446 + Rru_A2130 0.40 +0.7
2,473,467 - Rru_A2130 0.43 -0.5
2,473,584 + Rru_A2130 0.63 +1.2
2,473,584 + Rru_A2130 0.63 -0.5
2,473,584 + Rru_A2130 0.63 -1.2
2,473,584 + Rru_A2130 0.63 +0.0
2,473,584 + Rru_A2130 0.63 -1.5
2,473,584 + Rru_A2130 0.63 -1.5
2,473,585 - Rru_A2130 0.63 -0.4
2,473,585 - Rru_A2130 0.63 +0.1
2,473,585 - Rru_A2130 0.63 -0.8
2,473,585 - Rru_A2130 0.63 +0.2
2,473,613 + Rru_A2130 0.67 +1.0
2,473,613 + Rru_A2130 0.67 -2.3
2,473,613 + Rru_A2130 0.67 -0.1
2,473,614 - Rru_A2130 0.67 +0.9
2,473,692 + Rru_A2130 0.80 -1.0
2,473,693 - Rru_A2130 0.80 +0.6
2,473,859 + +0.0
2,473,860 - -0.7
2,473,864 + +0.4
2,473,865 - -0.1
2,473,872 + +0.1
2,473,872 + +0.2
2,473,872 + +0.8
2,473,872 + -0.8
2,473,974 - -0.2
2,473,974 - -1.5
2,473,987 + +1.1
2,473,987 + +1.3
2,473,988 - -0.1
2,473,988 - -0.2
2,473,988 - +2.0
2,473,988 - +0.2
2,473,988 - -0.2
2,473,996 + +0.8
2,474,012 - +0.8
2,474,027 + +1.3
2,474,028 - +0.4
2,474,053 - +0.5
2,474,053 - +0.7
2,474,053 - -0.2
2,474,055 + +1.5
2,474,086 - +2.0

Or see this region's nucleotide sequence