Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2126

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2125 and Rru_A2126 are separated by 232 nucleotidesRru_A2126 and Rru_A2127 are separated by 189 nucleotidesRru_A2127 and Rru_A2128 are separated by 27 nucleotides Rru_A2125: Rru_A2125 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI), at 2,466,930 to 2,468,585 _A2125 Rru_A2126: Rru_A2126 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (NCBI), at 2,468,818 to 2,469,660 _A2126 Rru_A2127: Rru_A2127 - Serine 3-dehydrogenase (NCBI), at 2,469,850 to 2,470,617 _A2127 Rru_A2128: Rru_A2128 - Transcriptional Regulator, LytR/AlgR family (NCBI), at 2,470,645 to 2,471,568 _A2128 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2468.059 kb on + strand, within Rru_A2125at 2468.060 kb on - strand, within Rru_A2125at 2468.089 kb on + strand, within Rru_A2125at 2468.089 kb on + strand, within Rru_A2125at 2468.089 kb on + strand, within Rru_A2125at 2468.090 kb on - strand, within Rru_A2125at 2468.090 kb on - strand, within Rru_A2125at 2468.090 kb on - strand, within Rru_A2125at 2468.153 kb on - strand, within Rru_A2125at 2468.153 kb on - strand, within Rru_A2125at 2468.173 kb on + strand, within Rru_A2125at 2468.174 kb on - strand, within Rru_A2125at 2468.190 kb on + strand, within Rru_A2125at 2468.191 kb on - strand, within Rru_A2125at 2468.225 kb on - strand, within Rru_A2125at 2468.245 kb on + strand, within Rru_A2125at 2468.246 kb on - strand, within Rru_A2125at 2468.395 kb on + strand, within Rru_A2125at 2468.395 kb on + strand, within Rru_A2125at 2468.395 kb on + strand, within Rru_A2125at 2468.396 kb on - strand, within Rru_A2125at 2468.396 kb on - strand, within Rru_A2125at 2468.396 kb on - strand, within Rru_A2125at 2468.791 kb on + strandat 2468.984 kb on + strand, within Rru_A2126at 2468.985 kb on - strand, within Rru_A2126at 2469.212 kb on + strand, within Rru_A2126at 2469.212 kb on + strand, within Rru_A2126at 2469.213 kb on - strand, within Rru_A2126at 2469.213 kb on - strand, within Rru_A2126at 2469.213 kb on - strand, within Rru_A2126at 2469.251 kb on + strand, within Rru_A2126at 2469.251 kb on + strand, within Rru_A2126at 2469.251 kb on + strand, within Rru_A2126at 2469.251 kb on + strand, within Rru_A2126at 2469.251 kb on + strand, within Rru_A2126at 2469.252 kb on - strand, within Rru_A2126at 2469.252 kb on - strand, within Rru_A2126at 2469.422 kb on + strand, within Rru_A2126at 2469.423 kb on - strand, within Rru_A2126at 2469.575 kb on + strand, within Rru_A2126at 2469.575 kb on + strand, within Rru_A2126at 2469.575 kb on + strand, within Rru_A2126at 2469.576 kb on - strandat 2469.582 kb on + strandat 2469.583 kb on - strandat 2469.645 kb on - strandat 2470.089 kb on + strand, within Rru_A2127at 2470.460 kb on - strand, within Rru_A2127at 2470.533 kb on + strand, within Rru_A2127at 2470.533 kb on + strand, within Rru_A2127at 2470.533 kb on + strand, within Rru_A2127at 2470.533 kb on + strand, within Rru_A2127at 2470.533 kb on + strand, within Rru_A2127at 2470.534 kb on - strand, within Rru_A2127at 2470.534 kb on - strand, within Rru_A2127at 2470.537 kb on - strand, within Rru_A2127at 2470.537 kb on - strand, within Rru_A2127at 2470.537 kb on - strand, within Rru_A2127at 2470.537 kb on - strand, within Rru_A2127at 2470.615 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
2,468,059 + Rru_A2125 0.68 +1.0
2,468,060 - Rru_A2125 0.68 -1.0
2,468,089 + Rru_A2125 0.70 +0.8
2,468,089 + Rru_A2125 0.70 -2.5
2,468,089 + Rru_A2125 0.70 -1.1
2,468,090 - Rru_A2125 0.70 -0.0
2,468,090 - Rru_A2125 0.70 +0.2
2,468,090 - Rru_A2125 0.70 +0.4
2,468,153 - Rru_A2125 0.74 -3.0
2,468,153 - Rru_A2125 0.74 +1.1
2,468,173 + Rru_A2125 0.75 -1.5
2,468,174 - Rru_A2125 0.75 +0.9
2,468,190 + Rru_A2125 0.76 -2.8
2,468,191 - Rru_A2125 0.76 -1.8
2,468,225 - Rru_A2125 0.78 -0.2
2,468,245 + Rru_A2125 0.79 -4.2
2,468,246 - Rru_A2125 0.79 -0.3
2,468,395 + Rru_A2125 0.88 -0.4
2,468,395 + Rru_A2125 0.88 +1.5
2,468,395 + Rru_A2125 0.88 -3.5
2,468,396 - Rru_A2125 0.89 -0.5
2,468,396 - Rru_A2125 0.89 -2.5
2,468,396 - Rru_A2125 0.89 +0.4
2,468,791 + +0.5
2,468,984 + Rru_A2126 0.20 -0.3
2,468,985 - Rru_A2126 0.20 -0.3
2,469,212 + Rru_A2126 0.47 -3.2
2,469,212 + Rru_A2126 0.47 -0.7
2,469,213 - Rru_A2126 0.47 -1.3
2,469,213 - Rru_A2126 0.47 +0.0
2,469,213 - Rru_A2126 0.47 -2.8
2,469,251 + Rru_A2126 0.51 -0.2
2,469,251 + Rru_A2126 0.51 -1.8
2,469,251 + Rru_A2126 0.51 -1.2
2,469,251 + Rru_A2126 0.51 -0.3
2,469,251 + Rru_A2126 0.51 +1.0
2,469,252 - Rru_A2126 0.51 +1.0
2,469,252 - Rru_A2126 0.51 +0.3
2,469,422 + Rru_A2126 0.72 -0.1
2,469,423 - Rru_A2126 0.72 -1.4
2,469,575 + Rru_A2126 0.90 -2.5
2,469,575 + Rru_A2126 0.90 -0.2
2,469,575 + Rru_A2126 0.90 +0.9
2,469,576 - -3.4
2,469,582 + +1.8
2,469,583 - -1.4
2,469,645 - -1.9
2,470,089 + Rru_A2127 0.31 -2.7
2,470,460 - Rru_A2127 0.79 -2.9
2,470,533 + Rru_A2127 0.89 -0.1
2,470,533 + Rru_A2127 0.89 -1.1
2,470,533 + Rru_A2127 0.89 +1.8
2,470,533 + Rru_A2127 0.89 -1.6
2,470,533 + Rru_A2127 0.89 +0.8
2,470,534 - Rru_A2127 0.89 +2.3
2,470,534 - Rru_A2127 0.89 +1.1
2,470,537 - Rru_A2127 0.89 +0.9
2,470,537 - Rru_A2127 0.89 -3.2
2,470,537 - Rru_A2127 0.89 -1.0
2,470,537 - Rru_A2127 0.89 -2.3
2,470,615 + +1.3

Or see this region's nucleotide sequence