Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1735

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1733 and Rru_A1734 are separated by 32 nucleotidesRru_A1734 and Rru_A1735 are separated by 168 nucleotidesRru_A1735 and Rru_A1736 are separated by 363 nucleotidesRru_A1736 and Rru_A1737 are separated by 5 nucleotidesRru_A1737 and Rru_A1738 are separated by 39 nucleotides Rru_A1733: Rru_A1733 - hypothetical protein (NCBI), at 2,027,225 to 2,028,361 _A1733 Rru_A1734: Rru_A1734 - hypothetical protein (NCBI), at 2,028,394 to 2,028,663 _A1734 Rru_A1735: Rru_A1735 - hypothetical protein (NCBI), at 2,028,832 to 2,029,596 _A1735 Rru_A1736: Rru_A1736 - hypothetical protein (NCBI), at 2,029,960 to 2,030,223 _A1736 Rru_A1737: Rru_A1737 - hypothetical protein (NCBI), at 2,030,229 to 2,030,507 _A1737 Rru_A1738: Rru_A1738 - Protein of unknown function UPF0150 (NCBI), at 2,030,547 to 2,030,933 _A1738 Position (kb) 2028 2029 2030Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2027.842 kb on + strand, within Rru_A1733at 2027.917 kb on - strand, within Rru_A1733at 2027.917 kb on - strand, within Rru_A1733at 2028.041 kb on + strand, within Rru_A1733at 2028.041 kb on + strand, within Rru_A1733at 2028.042 kb on - strand, within Rru_A1733at 2028.042 kb on - strand, within Rru_A1733at 2028.396 kb on - strandat 2028.553 kb on + strand, within Rru_A1734at 2028.553 kb on + strand, within Rru_A1734at 2028.553 kb on + strand, within Rru_A1734at 2028.554 kb on - strand, within Rru_A1734at 2028.554 kb on - strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.563 kb on + strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.564 kb on - strand, within Rru_A1734at 2028.663 kb on + strandat 2028.663 kb on + strandat 2028.664 kb on - strandat 2028.664 kb on - strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.774 kb on + strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.775 kb on - strandat 2028.801 kb on + strandat 2029.044 kb on + strand, within Rru_A1735at 2029.589 kb on - strandat 2029.648 kb on - strandat 2029.648 kb on - strandat 2029.687 kb on + strandat 2029.763 kb on + strandat 2029.763 kb on + strandat 2029.764 kb on - strandat 2029.772 kb on + strandat 2029.772 kb on + strandat 2029.786 kb on + strandat 2029.786 kb on + strandat 2029.787 kb on - strandat 2029.911 kb on + strandat 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2030.240 kb on + strandat 2030.240 kb on + strandat 2030.240 kb on + strandat 2030.299 kb on - strand, within Rru_A1737at 2030.299 kb on - strand, within Rru_A1737at 2030.505 kb on + strandat 2030.505 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,027,842 + Rru_A1733 0.54 +0.8
2,027,917 - Rru_A1733 0.61 -1.1
2,027,917 - Rru_A1733 0.61 +0.7
2,028,041 + Rru_A1733 0.72 +1.1
2,028,041 + Rru_A1733 0.72 -0.5
2,028,042 - Rru_A1733 0.72 -0.2
2,028,042 - Rru_A1733 0.72 +0.5
2,028,396 - -0.3
2,028,553 + Rru_A1734 0.59 +0.4
2,028,553 + Rru_A1734 0.59 -0.4
2,028,553 + Rru_A1734 0.59 +1.5
2,028,554 - Rru_A1734 0.59 +0.5
2,028,554 - Rru_A1734 0.59 +0.8
2,028,563 + Rru_A1734 0.63 +0.6
2,028,563 + Rru_A1734 0.63 -1.8
2,028,563 + Rru_A1734 0.63 +1.2
2,028,563 + Rru_A1734 0.63 +0.2
2,028,563 + Rru_A1734 0.63 +0.3
2,028,564 - Rru_A1734 0.63 +0.2
2,028,564 - Rru_A1734 0.63 -0.8
2,028,564 - Rru_A1734 0.63 -0.0
2,028,663 + -3.7
2,028,663 + +0.6
2,028,664 - -3.2
2,028,664 - +0.3
2,028,774 + -3.8
2,028,774 + -1.2
2,028,774 + -1.1
2,028,774 + -3.0
2,028,774 + +0.3
2,028,775 - -0.5
2,028,775 - +1.3
2,028,775 - -2.3
2,028,775 - -4.1
2,028,801 + -3.5
2,029,044 + Rru_A1735 0.28 -4.6
2,029,589 - -2.0
2,029,648 - -4.2
2,029,648 - -0.5
2,029,687 + +0.9
2,029,763 + -1.0
2,029,763 + -2.7
2,029,764 - +1.0
2,029,772 + -0.2
2,029,772 + -0.5
2,029,786 + +0.1
2,029,786 + -0.6
2,029,787 - +0.2
2,029,911 + +0.9
2,029,991 + Rru_A1736 0.12 +1.9
2,029,991 + Rru_A1736 0.12 +0.7
2,029,991 + Rru_A1736 0.12 -1.0
2,029,991 + Rru_A1736 0.12 -0.6
2,029,991 + Rru_A1736 0.12 +0.2
2,029,992 - Rru_A1736 0.12 +0.7
2,029,992 - Rru_A1736 0.12 -1.7
2,029,992 - Rru_A1736 0.12 -0.3
2,029,992 - Rru_A1736 0.12 +1.4
2,030,240 + -0.8
2,030,240 + +0.4
2,030,240 + -3.3
2,030,299 - Rru_A1737 0.25 +0.1
2,030,299 - Rru_A1737 0.25 +0.2
2,030,505 + +2.1
2,030,505 + +0.7

Or see this region's nucleotide sequence