Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1658

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1657 and Rru_A1658 are separated by 197 nucleotidesRru_A1658 and Rru_A1659 are separated by 154 nucleotides Rru_A1657: Rru_A1657 - Major facilitator superfamily MFS_1 (NCBI), at 1,947,588 to 1,948,775 _A1657 Rru_A1658: Rru_A1658 - AMP-dependent synthetase and ligase (NCBI), at 1,948,973 to 1,950,601 _A1658 Rru_A1659: Rru_A1659 - Putative diguanylate phosphodiesterase (EAL domain) (NCBI), at 1,950,756 to 1,952,378 _A1659 Position (kb) 1948 1949 1950 1951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1948.096 kb on + strand, within Rru_A1657at 1948.097 kb on - strand, within Rru_A1657at 1948.097 kb on - strand, within Rru_A1657at 1948.099 kb on + strand, within Rru_A1657at 1948.099 kb on + strand, within Rru_A1657at 1948.099 kb on + strand, within Rru_A1657at 1948.100 kb on - strand, within Rru_A1657at 1948.100 kb on - strand, within Rru_A1657at 1948.100 kb on - strand, within Rru_A1657at 1948.100 kb on - strand, within Rru_A1657at 1948.537 kb on + strand, within Rru_A1657at 1948.538 kb on - strand, within Rru_A1657at 1948.538 kb on - strand, within Rru_A1657at 1948.750 kb on + strandat 1948.750 kb on + strandat 1948.751 kb on - strandat 1948.873 kb on + strandat 1948.874 kb on - strandat 1948.875 kb on + strandat 1948.875 kb on + strandat 1948.875 kb on + strandat 1948.875 kb on + strandat 1948.875 kb on + strandat 1948.875 kb on + strandat 1948.876 kb on - strandat 1948.876 kb on - strandat 1948.876 kb on - strandat 1949.105 kb on + strandat 1949.105 kb on + strandat 1949.105 kb on + strandat 1949.106 kb on - strandat 1949.106 kb on - strandat 1949.107 kb on + strandat 1949.107 kb on + strandat 1949.108 kb on - strandat 1949.108 kb on - strandat 1949.108 kb on - strandat 1949.182 kb on + strand, within Rru_A1658at 1949.183 kb on - strand, within Rru_A1658at 1949.207 kb on - strand, within Rru_A1658at 1949.207 kb on - strand, within Rru_A1658at 1949.270 kb on - strand, within Rru_A1658at 1949.302 kb on + strand, within Rru_A1658at 1949.423 kb on + strand, within Rru_A1658at 1949.424 kb on - strand, within Rru_A1658at 1949.459 kb on + strand, within Rru_A1658at 1949.460 kb on - strand, within Rru_A1658at 1949.460 kb on - strand, within Rru_A1658at 1949.540 kb on + strand, within Rru_A1658at 1949.540 kb on + strand, within Rru_A1658at 1949.540 kb on + strand, within Rru_A1658at 1949.540 kb on + strand, within Rru_A1658at 1949.541 kb on - strand, within Rru_A1658at 1949.541 kb on - strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.542 kb on + strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.543 kb on - strand, within Rru_A1658at 1949.579 kb on + strand, within Rru_A1658at 1949.598 kb on - strand, within Rru_A1658at 1949.598 kb on - strand, within Rru_A1658at 1949.651 kb on + strand, within Rru_A1658at 1949.652 kb on - strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.954 kb on + strand, within Rru_A1658at 1949.955 kb on - strand, within Rru_A1658at 1949.955 kb on - strand, within Rru_A1658at 1949.955 kb on - strand, within Rru_A1658at 1949.972 kb on + strand, within Rru_A1658at 1949.972 kb on + strand, within Rru_A1658at 1950.066 kb on - strand, within Rru_A1658at 1950.066 kb on - strand, within Rru_A1658at 1950.163 kb on + strand, within Rru_A1658at 1950.164 kb on - strand, within Rru_A1658at 1950.164 kb on - strand, within Rru_A1658at 1950.179 kb on + strand, within Rru_A1658at 1950.319 kb on + strand, within Rru_A1658at 1950.319 kb on + strand, within Rru_A1658at 1950.319 kb on + strand, within Rru_A1658at 1950.319 kb on + strand, within Rru_A1658at 1950.320 kb on - strand, within Rru_A1658at 1950.320 kb on - strand, within Rru_A1658at 1950.500 kb on + strandat 1950.500 kb on + strandat 1950.500 kb on + strandat 1950.500 kb on + strandat 1950.500 kb on + strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.501 kb on - strandat 1950.502 kb on + strandat 1950.502 kb on + strandat 1950.502 kb on + strandat 1950.502 kb on + strandat 1950.502 kb on + strandat 1950.502 kb on + strandat 1950.503 kb on - strandat 1950.503 kb on - strandat 1950.503 kb on - strandat 1950.503 kb on - strandat 1950.503 kb on - strandat 1950.553 kb on + strandat 1950.720 kb on + strandat 1950.720 kb on + strandat 1950.756 kb on - strandat 1950.756 kb on - strandat 1950.948 kb on + strand, within Rru_A1659at 1951.311 kb on + strand, within Rru_A1659at 1951.482 kb on + strand, within Rru_A1659at 1951.483 kb on - strand, within Rru_A1659

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,948,096 + Rru_A1657 0.43 +1.1
1,948,097 - Rru_A1657 0.43 +0.5
1,948,097 - Rru_A1657 0.43 +1.1
1,948,099 + Rru_A1657 0.43 +0.8
1,948,099 + Rru_A1657 0.43 +1.0
1,948,099 + Rru_A1657 0.43 +1.0
1,948,100 - Rru_A1657 0.43 +0.2
1,948,100 - Rru_A1657 0.43 +0.0
1,948,100 - Rru_A1657 0.43 -3.7
1,948,100 - Rru_A1657 0.43 +0.2
1,948,537 + Rru_A1657 0.80 -1.9
1,948,538 - Rru_A1657 0.80 -0.6
1,948,538 - Rru_A1657 0.80 +0.0
1,948,750 + -0.3
1,948,750 + +1.6
1,948,751 - -0.9
1,948,873 + -0.0
1,948,874 - -2.9
1,948,875 + +0.3
1,948,875 + -0.4
1,948,875 + -1.1
1,948,875 + -0.7
1,948,875 + +0.1
1,948,875 + -2.8
1,948,876 - -4.0
1,948,876 - +2.5
1,948,876 - +0.9
1,949,105 + +0.5
1,949,105 + -1.7
1,949,105 + -0.7
1,949,106 - -0.7
1,949,106 - -3.4
1,949,107 + -0.4
1,949,107 + -0.4
1,949,108 - -0.1
1,949,108 - -3.6
1,949,108 - -3.7
1,949,182 + Rru_A1658 0.13 -4.1
1,949,183 - Rru_A1658 0.13 +0.2
1,949,207 - Rru_A1658 0.14 -0.8
1,949,207 - Rru_A1658 0.14 -1.1
1,949,270 - Rru_A1658 0.18 -2.0
1,949,302 + Rru_A1658 0.20 +0.4
1,949,423 + Rru_A1658 0.28 -1.6
1,949,424 - Rru_A1658 0.28 -2.0
1,949,459 + Rru_A1658 0.30 +1.3
1,949,460 - Rru_A1658 0.30 -0.3
1,949,460 - Rru_A1658 0.30 -1.5
1,949,540 + Rru_A1658 0.35 +0.8
1,949,540 + Rru_A1658 0.35 +0.5
1,949,540 + Rru_A1658 0.35 -3.0
1,949,540 + Rru_A1658 0.35 +0.9
1,949,541 - Rru_A1658 0.35 -3.4
1,949,541 - Rru_A1658 0.35 -4.0
1,949,542 + Rru_A1658 0.35 +1.7
1,949,542 + Rru_A1658 0.35 -0.2
1,949,542 + Rru_A1658 0.35 -0.7
1,949,542 + Rru_A1658 0.35 -3.7
1,949,542 + Rru_A1658 0.35 -0.2
1,949,542 + Rru_A1658 0.35 +1.0
1,949,543 - Rru_A1658 0.35 +0.1
1,949,543 - Rru_A1658 0.35 -2.7
1,949,543 - Rru_A1658 0.35 -2.6
1,949,543 - Rru_A1658 0.35 -0.2
1,949,543 - Rru_A1658 0.35 -2.0
1,949,543 - Rru_A1658 0.35 -3.3
1,949,579 + Rru_A1658 0.37 -0.2
1,949,598 - Rru_A1658 0.38 -4.1
1,949,598 - Rru_A1658 0.38 -2.8
1,949,651 + Rru_A1658 0.42 +0.4
1,949,652 - Rru_A1658 0.42 -3.2
1,949,954 + Rru_A1658 0.60 +1.4
1,949,954 + Rru_A1658 0.60 -1.3
1,949,954 + Rru_A1658 0.60 +0.2
1,949,954 + Rru_A1658 0.60 -0.8
1,949,954 + Rru_A1658 0.60 -1.4
1,949,954 + Rru_A1658 0.60 -1.6
1,949,955 - Rru_A1658 0.60 -2.5
1,949,955 - Rru_A1658 0.60 -1.7
1,949,955 - Rru_A1658 0.60 -4.2
1,949,972 + Rru_A1658 0.61 -2.4
1,949,972 + Rru_A1658 0.61 -3.0
1,950,066 - Rru_A1658 0.67 -0.0
1,950,066 - Rru_A1658 0.67 -4.1
1,950,163 + Rru_A1658 0.73 -3.5
1,950,164 - Rru_A1658 0.73 +2.1
1,950,164 - Rru_A1658 0.73 +1.3
1,950,179 + Rru_A1658 0.74 +0.9
1,950,319 + Rru_A1658 0.83 +2.0
1,950,319 + Rru_A1658 0.83 +1.1
1,950,319 + Rru_A1658 0.83 -0.3
1,950,319 + Rru_A1658 0.83 +1.6
1,950,320 - Rru_A1658 0.83 -4.0
1,950,320 - Rru_A1658 0.83 -1.6
1,950,500 + -0.1
1,950,500 + -1.0
1,950,500 + -0.3
1,950,500 + +0.1
1,950,500 + +0.5
1,950,501 - -0.5
1,950,501 - +0.1
1,950,501 - -0.2
1,950,501 - -0.6
1,950,501 - -1.0
1,950,501 - +0.5
1,950,501 - +2.0
1,950,502 + -0.1
1,950,502 + +0.6
1,950,502 + -0.2
1,950,502 + -3.2
1,950,502 + -0.2
1,950,502 + +0.3
1,950,503 - +1.2
1,950,503 - +1.6
1,950,503 - -2.9
1,950,503 - -1.6
1,950,503 - +0.3
1,950,553 + -0.2
1,950,720 + -0.2
1,950,720 + -1.2
1,950,756 - -2.6
1,950,756 - +0.1
1,950,948 + Rru_A1659 0.12 +0.1
1,951,311 + Rru_A1659 0.34 +2.1
1,951,482 + Rru_A1659 0.45 -1.3
1,951,483 - Rru_A1659 0.45 -0.8

Or see this region's nucleotide sequence